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    nbr1b NBR1 autophagy cargo receptor b [ Salarias fasciatus (jewelled blenny) ]

    Gene ID: 115387172, updated on 17-Mar-2024

    Summary

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    Gene symbol
    nbr1b
    Gene description
    NBR1 autophagy cargo receptor b
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salarias fasciatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Blenniimorphae; Blenniiformes; Blennioidei; Blenniidae; Salariinae; Salarias
    Orthologs
    zebrafish all
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    Genomic context

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    See nbr1b in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    100 current fSalaFa1.1 (GCF_902148845.1) 4 NC_043748.1 (24463700..24474694, complement)

    Chromosome 4 - NC_043748.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like 4D Neighboring gene transmembrane protein 106B-like Neighboring gene oxysterol-binding protein-related protein 7-like Neighboring gene TANK-binding kinase 1-binding protein 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_043748.1 Chromosome 4 Reference fSalaFa1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in phagophore assembly site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: next to BRCA1 gene 1 protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salarias fasciatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSalaFa1.1 Primary Assembly

    Genomic

    1. NC_043748.1 Reference fSalaFa1.1 Primary Assembly

      Range
      24463700..24474694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030089777.1 → XP_029945637.1  LOW QUALITY PROTEIN: next to BRCA1 gene 1 protein-like

      Conserved Domains (5) summary
      cd06396
      Location:5 → 85
      PB1_NBR1; The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves ...
      PHA03247
      Location:564 → 935
      PHA03247; large tegument protein UL36; Provisional
      cd14319
      Location:973 → 1009
      UBA_NBR1; UBA domain of next to BRCA1 gene 1 protein (NBR1) and similar proteins
      cd14947
      Location:365 → 476
      NBR1_like; Functionally uncharacterized domain in neighbor of Brca1 Gene 1 and related proteins
      pfam17253
      Location:285 → 320
      DUF5320; Family of unknown function (DUF5320)
    Nucleotide Protein
    Heading Accession and Version

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