U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    tnrc6c1 trinucleotide repeat containing adaptor 6C1 [ Salarias fasciatus (jewelled blenny) ]

    Gene ID: 115387490, updated on 17-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    tnrc6c1
    Gene description
    trinucleotide repeat containing adaptor 6C1
    See related
    Ensembl:ENSSFAG00005011408
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salarias fasciatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Blenniimorphae; Blenniiformes; Blennioidei; Blenniidae; Salariinae; Salarias
    Orthologs
    zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See tnrc6c1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current fSalaFa1.1 (GCF_902148845.1) 4 NC_043748.1 (15748042..15762562)

    Chromosome 4 - NC_043748.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115387786 Neighboring gene septin-9-like Neighboring gene uncharacterized LOC115387226 Neighboring gene uncharacterized LOC115387492 Neighboring gene zona pellucida sperm-binding protein 3-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_043748.1 Chromosome 4 Reference fSalaFa1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in miRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6C protein-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Salarias fasciatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSalaFa1.1 Primary Assembly

    Genomic

    1. NC_043748.1 Reference fSalaFa1.1 Primary Assembly

      Range
      15748042..15762562
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030090212.1 → XP_029946072.1  LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6C protein-like

      UniProtKB/TrEMBL
      A0A672GXY4
      Related
      ENSSFAP00005021890.1, ENSSFAT00005022814.1
      Conserved Domains (5) summary
      cd12713
      Location:1562 → 1644
      RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      cd14283
      Location:985 → 1022
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:870 → 988
      Ago_hook; Argonaute hook
      pfam12938
      Location:1108 → 1249
      M_domain; M domain of GW182
      pfam16608
      Location:1258 → 1545
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases