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    HTRA1 HtrA serine peptidase 1 [ Manacus vitellinus (golden-collared manakin) ]

    Gene ID: 103761888, updated on 3-Aug-2024

    Summary

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    Gene symbol
    HTRA1
    Gene description
    HtrA serine peptidase 1
    Locus tag
    N305_01465
    See related
    Ensembl:ENSMVIG00005015509
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Manacus vitellinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Manacus
    Orthologs
    human mouse all
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    Genomic context

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    See HTRA1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current ASM171598v3 (GCF_001715985.3) Unplaced Scaffold NW_021940541.1 (4508728..4542562, complement)
    101 previous assembly ASM171598v1 (GCF_001715985.1) Unplaced Scaffold NW_017220103.1 (4646209..4666370, complement)

    NW_021940541.1Genomic Context describing neighboring genes Neighboring gene deleted in malignant brain tumors 1 protein Neighboring gene deleted in malignant brain tumors 1 protein-like Neighboring gene pleckstrin homology domain containing A1 Neighboring gene transforming acidic coiled-coil containing protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in programmed cell death IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: serine protease HTRA1
    Names
    Serine protease HTRA1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Manacus vitellinus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM171598v3

    Genomic

    1. NW_021940541.1 Reference ASM171598v3

      Range
      4508728..4542562 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029961992.1 → XP_029817852.1  LOW QUALITY PROTEIN: serine protease HTRA1

      Conserved Domains (2) summary
      TIGR02037
      Location:280 → 582
      degP_htrA_DO; periplasmic serine protease, Do/DeqQ family
      pfam00219
      Location:140 → 195
      IGFBP; Insulin-like growth factor binding protein
    Nucleotide Protein
    Heading Accession and Version

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