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    RAG1 recombination activating 1 [ Tyto alba (common barn owl) ]

    Gene ID: 104355454, updated on 3-Aug-2024

    Summary

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    Gene symbol
    RAG1
    Gene description
    recombination activating 1
    Locus tag
    N341_04084
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tyto alba
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
    Also known as
    RAG-1
    Orthologs
    human mouse all
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    Genomic context

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    See RAG1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881280.1 (1241943..1245053)
    100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_009976758.1 (10029..13139, complement)

    NW_024881280.1Genomic Context describing neighboring genes Neighboring gene proline rich 5 like Neighboring gene TNF receptor associated factor 6 Neighboring gene recombination activating 2 Neighboring gene intraflagellar transport associated protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in V(D)J recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in adaptive immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pre-B cell allelic exclusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA recombinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of endodeoxyribonuclease complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V(D)J recombination-activating protein 1
    Names
    recombination activating protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference T.alba_DEE_v4.0

    Genomic

    1. NW_024881280.1 Reference T.alba_DEE_v4.0

      Range
      1241943..1245053
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009975325.3 → XP_009973627.2  V(D)J recombination-activating protein 1

      UniProtKB/TrEMBL
      A0A109RXZ1
      Conserved Domains (4) summary
      pfam10426
      Location:346 → 375
      zf-RAG1; Recombination-activating protein 1 zinc-finger domain
      pfam12940
      Location:380 → 1015
      RAG1; Recombination-activation protein 1 (RAG1), recombinase
      cd16530
      Location:281 → 326
      RING-HC_RAG1; RING finger, HC subclass, found in recombination activating gene-1 (RAG-1) and similar proteins
      pfam12560
      Location:7 → 282
      RAG1_imp_bd; RAG1 importin binding
    Nucleotide Protein
    Heading Accession and Version

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