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    LOC115577892 REST corepressor 3-like [ Sparus aurata (gilthead seabream) ]

    Gene ID: 115577892, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC115577892
    Gene description
    REST corepressor 3-like
    See related
    Ensembl:ENSSAUG00010018291
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sparus aurata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus
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    Genomic context

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    See LOC115577892 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current fSpaAur1.1 (GCF_900880675.1) 1 NC_044187.1 (1606377..1615106, complement)

    Chromosome 1 - NC_044187.1Genomic Context describing neighboring genes Neighboring gene NACHT, LRR and PYD domains-containing protein 3-like Neighboring gene TNF receptor-associated factor 5-like Neighboring gene potassium voltage-gated channel subfamily H member 1 Neighboring gene REST corepressor 3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044187.1 Chromosome 1 Reference fSpaAur1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: REST corepressor 3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sparus aurata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSpaAur1.1 Primary Assembly

    Genomic

    1. NC_044187.1 Reference fSpaAur1.1 Primary Assembly

      Range
      1606377..1615106 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030410785.1 → XP_030266645.1  LOW QUALITY PROTEIN: REST corepressor 3-like

      UniProtKB/TrEMBL
      A0A671WXB8
      Related
      ENSSAUP00010043627.1, ENSSAUT00010045907.1
      Conserved Domains (3) summary
      pfam00249
      Location:332 → 375
      Myb_DNA-binding; Myb-like DNA-binding domain
      pfam01448
      Location:45 → 96
      ELM2; ELM2 domain
      cl21498
      Location:132 → 176
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    Nucleotide Protein
    Heading Accession and Version

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