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    LOC115589944 procollagen galactosyltransferase 1-like [ Sparus aurata (gilthead seabream) ]

    Gene ID: 115589944, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC115589944
    Gene description
    procollagen galactosyltransferase 1-like
    See related
    Ensembl:ENSSAUG00010016738
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sparus aurata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus
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    Genomic context

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    See LOC115589944 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current fSpaAur1.1 (GCF_900880675.1) 1 NC_044187.1 (27536092..27551471)

    Chromosome 1 - NC_044187.1Genomic Context describing neighboring genes Neighboring gene long-chain fatty acid transport protein 1-like Neighboring gene tripartite motif-containing protein 35-like Neighboring gene nucleoredoxin-like protein 1 Neighboring gene nucleoredoxin like 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044187.1 Chromosome 1 Reference fSpaAur1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables procollagen galactosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: procollagen galactosyltransferase 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sparus aurata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSpaAur1.1 Primary Assembly

    Genomic

    1. NC_044187.1 Reference fSpaAur1.1 Primary Assembly

      Range
      27536092..27551471
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030431124.1 → XP_030286984.1  LOW QUALITY PROTEIN: procollagen galactosyltransferase 1-like

      UniProtKB/TrEMBL
      A0A671WPQ1
      Related
      ENSSAUP00010039864.1, ENSSAUT00010042018.1
      Conserved Domains (2) summary
      cl01298
      Location:326 → 511
      Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
      cl11394
      Location:40 → 87
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    Nucleotide Protein
    Heading Accession and Version

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