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    rabr-2 Ras-related protein Rab-44 [ Caenorhabditis elegans ]

    Gene ID: 181797, updated on 2-Nov-2024

    Summary

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    Official Symbol
    rabr-2
    Official Full Name
    Ras-related protein Rab-44
    Primary source
    WormBase:WBGene00007067
    Locus tag
    CELE_4R79.2
    See related
    AllianceGenome:WB:WBGene00007067
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in vesicle-mediated transport. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See rabr-2 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    10
    Sequence:
    Chromosome: IV; NC_003282.8 (17480298..17483330, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Putative glucosylceramidase 3 Neighboring gene ncRNA Neighboring gene Ground-like domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Metalloendopeptidase;Zinc metalloproteinase nas-6 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    2. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables GTP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables GTPase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Ras-related protein Rab-44
    NP_001255966.1
    • Confirmed by transcript evidence
    NP_001255967.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      17480298..17483330 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001269037.2 → NP_001255966.1  Ras-related protein Rab-44 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255966.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      I7EVL8, Q9XXA4
      Conserved Domains (2) summary
      smart00175
      Location:203 → 370
      RAB; Rab subfamily of small GTPases
      cd00154
      Location:203 → 365
      Rab; Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

    2. NM_001269038.1 → NP_001255967.1  Ras-related protein Rab-44 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255967.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      D3NQA2
      Conserved Domains (2) summary
      smart00175
      Location:119 → 286
      RAB; Rab subfamily of small GTPases
      cd00154
      Location:119 → 281
      Rab; Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)
    Nucleotide Protein
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