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    slc4a11 solute carrier family 4 member 11 [ Pseudochaenichthys georgianus (South Georgia icefish) ]

    Gene ID: 117468216, updated on 19-Mar-2024

    Summary

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    Gene symbol
    slc4a11
    Gene description
    solute carrier family 4 member 11
    See related
    EnsemblRapid:ENSPGEG00000023527
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pseudochaenichthys georgianus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Channichthyidae; Pseudochaenichthys
    Orthologs
    human zebrafish all
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    Genomic context

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    See slc4a11 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    100 current fPseGeo1.1 (GCF_902827115.1) 22 NC_047524.1 (6174846..6334498, complement)

    Chromosome 22 - NC_047524.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 3 Neighboring gene ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) Neighboring gene kyphoscoliosis peptidase Neighboring gene dynein axonemal assembly factor 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047524.1 Chromosome 22 Reference fPseGeo1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables solute:inorganic anion antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in monoatomic anion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in basolateral plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sodium bicarbonate transporter-like protein 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pseudochaenichthys georgianus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fPseGeo1.1

    Genomic

    1. NC_047524.1 Reference fPseGeo1.1

      Range
      6174846..6334498 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034112256.1 → XP_033968147.1  sodium bicarbonate transporter-like protein 11 isoform X1

      Related
      ENSPGEP00000054891.1, ENSPGET00000056926.1
      Conserved Domains (1) summary
      pfam00955
      Location:324 → 806
      HCO3_cotransp; HCO3- transporter family

    2. XM_034112259.1 → XP_033968150.1  sodium bicarbonate transporter-like protein 11 isoform X3

      Related
      ENSPGEP00000054899.1, ENSPGET00000056934.1
      Conserved Domains (1) summary
      pfam00955
      Location:316 → 798
      HCO3_cotransp; HCO3- transporter family

    3. XM_034112257.1 → XP_033968148.1  sodium bicarbonate transporter-like protein 11 isoform X2

      Related
      ENSPGEP00000054893.1, ENSPGET00000056928.1
      Conserved Domains (1) summary
      pfam00955
      Location:317 → 799
      HCO3_cotransp; HCO3- transporter family
    Nucleotide Protein
    Heading Accession and Version

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