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    LOC101873882 zinc finger and BTB domain-containing protein 8A-like [ Melopsittacus undulatus (budgerigar) ]

    Gene ID: 101873882, updated on 8-Nov-2024

    Summary

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    Gene symbol
    LOC101873882
    Gene description
    zinc finger and BTB domain-containing protein 8A-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Melopsittacus undulatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittaculidae; Melopsittacus
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    Genomic context

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    See LOC101873882 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_11 current bMelUnd1.mat.Z (GCF_012275295.1) 14 NC_047540.1 (562258..568963)

    Chromosome 14 - NC_047540.1Genomic Context describing neighboring genes Neighboring gene hydrocephalus-inducing protein homolog Neighboring gene zinc finger and BTB domain-containing protein 8B-like Neighboring gene zinc finger and BTB domain-containing protein 8A-like Neighboring gene protein archease-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047540.1 Chromosome 14 Reference bMelUnd1.mat.Z

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger and BTB domain-containing protein 8A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_012275295.1-RS_2024_11

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bMelUnd1.mat.Z

    Genomic

    1. NC_047540.1 Reference bMelUnd1.mat.Z

      Range
      562258..568963
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034069360.1 → XP_033925251.1  zinc finger and BTB domain-containing protein 8A-like isoform X1

      Conserved Domains (4) summary
      sd00017
      Location:324 → 344
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18329
      Location:3 → 118
      BTB_POZ_ZBTB8A_BOZF1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 8A (ZBTB8A)
      pfam13465
      Location:336 → 361
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:322 → 346
      zf-H2C2_5; C2H2-type zinc-finger domain

    2. XM_034069362.1 → XP_033925253.1  zinc finger and BTB domain-containing protein 8A-like isoform X2

      Conserved Domains (4) summary
      sd00017
      Location:323 → 343
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18329
      Location:3 → 118
      BTB_POZ_ZBTB8A_BOZF1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 8A (ZBTB8A)
      pfam13465
      Location:335 → 360
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:321 → 345
      zf-H2C2_5; C2H2-type zinc-finger domain
    Nucleotide Protein
    Heading Accession and Version

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