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    CELLULOSE SYNTHASE INTERACTIVE 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841015, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CELLULOSE SYNTHASE INTERACTIVE 2
    Primary source
    TAIR:AT1G44120
    Locus tag
    AT1G44120
    See related
    Araport:AT1G44120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CELLULOSE SYNTHASE INTERACTIVE 2; CSI2; T7O23.25; T7O23_25
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (16780059..16787623)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene amino acid permease 5 Neighboring gene ncRNA Neighboring gene Cyclin A1;1 Neighboring gene ncRNA Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene pseudo Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_103538.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in anisotropic cell growth IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of cellulose synthase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CELLULOSE SYNTHASE INTERACTIVE 2
    NP_175078.1
    • Armadillo/beta-catenin-like repeat; C2 calcium/lipid-binding domain (CaLB) protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Armadillo/beta-catenin-like repeat; C2 calcium/lipid-binding domain (CaLB) protein (TAIR:AT1G77460.2); Has 2932 Blast hits to 1598 proteins in 201 species: Archae - 2; Bacteria - 13; Metazoa - 467; Fungi - 147; Plants - 2069; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      16780059..16787623
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333226.1 → NP_001321524.1  CELLULOSE SYNTHASE INTERACTIVE 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6U6, A0A1P8ARA5

    2. NM_001333227.1 → NP_001321523.1  CELLULOSE SYNTHASE INTERACTIVE 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6U6, A0A1P8AR52

    3. NM_103538.1 → NP_175078.1  CELLULOSE SYNTHASE INTERACTIVE 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175078.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C6Y4
      UniProtKB/TrEMBL
      A0A178W6U4
      Conserved Domains (4) summary
      PLN03200
      Location:1 → 2112
      PLN03200; cellulose synthase-interactive protein; Provisional
      cd00020
      Location:441 → 556
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam00168
      Location:1993 → 2089
      C2; C2 domain
      sd00043
      Location:449 → 474
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C6Y4.1

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