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    LAC16 laccase 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836008, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LAC16
    Official Full Name
    laccase 16
    Primary source
    TAIR:AT5G58910
    Locus tag
    AT5G58910
    See related
    Araport:AT5G58910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K19M22.11; K19M22_11; laccase 16
    Summary
    putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
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    Genomic context

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    See LAC16 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (23789363..23792382, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene AGAMOUS-like 82 Neighboring gene Homeodomain-like transcriptional regulator Neighboring gene homeobox prospero protein Neighboring gene hypothetical protein (DUF740)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydroquinone:oxygen oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    laccase 16
    NP_200699.1
    • laccase 16 (LAC16); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: apoplast; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Multicopper oxidase, type 2 (InterPro:IPR011706), Laccase (InterPro:IPR017761), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Laccase/Diphenol oxidase family protein (TAIR:AT2G38080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23789363..23792382 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345328.1 → NP_001330402.1  laccase 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDN3, A0A1P8BAQ4, A0A5S9YFU4, A0A654GCK4, A0A7G2FL99
      Conserved Domains (1) summary
      TIGR03389
      Location:28 → 567
      laccase; plant

    2. NM_001345329.1 → NP_001330401.1  laccase 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MFQ5, F4KGE3, Q1PDH6, Q3E893
      UniProtKB/TrEMBL
      A0A178UDN3, A0A5S9YFU4, A0A654GCK4
      Conserved Domains (4) summary
      cd13849
      Location:32 → 147
      CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
      cd13875
      Location:163 → 309
      CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
      cd13897
      Location:410 → 549
      CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
      TIGR03389
      Location:28 → 566
      laccase; laccase, plant

    3. NM_125281.1 → NP_200699.1  laccase 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200699.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDN3, A0A5S9YFU4, A0A654GCK4
      Conserved Domains (4) summary
      cd13849
      Location:1 → 104
      CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
      cd13875
      Location:120 → 266
      CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
      cd13897
      Location:367 → 506
      CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
      TIGR03389
      Location:1 → 523
      laccase; laccase, plant
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1PDH6.2

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