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    LOC117810448 photoreceptor-specific nuclear receptor-like [ Notolabrus celidotus (New Zealand spotty) ]

    Gene ID: 117810448, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC117810448
    Gene description
    photoreceptor-specific nuclear receptor-like
    See related
    EnsemblRapid:ENSNCEG00005017670
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Notolabrus celidotus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Notolabrus
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    Genomic context

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    See LOC117810448 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current fNotCel1.pri (GCF_009762535.1) 3 NC_048274.1 (4510301..4516279, complement)

    Chromosome 3 - NC_048274.1Genomic Context describing neighboring genes Neighboring gene immunoglobulin superfamily containing leucine-rich repeat protein 2-like Neighboring gene receptor for retinol uptake stra6-like Neighboring gene uncharacterized LOC117810958 Neighboring gene solute carrier family 22 member 18 Neighboring gene very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_048274.1 Chromosome 3 Reference fNotCel1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    photoreceptor-specific nuclear receptor-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Notolabrus celidotus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fNotCel1.pri

    Genomic

    1. NC_048274.1 Reference fNotCel1.pri

      Range
      4510301..4516279 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034680295.1 → XP_034536186.1  photoreceptor-specific nuclear receptor-like

      Related
      ENSNCEP00005041718.1, ENSNCET00005043233.1
    Nucleotide Protein
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