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    LINC02751 long intergenic non-protein coding RNA 2751 [ Homo sapiens (human) ]

    Gene ID: 105376569, updated on 13-Mar-2024

    Summary

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    Official Symbol
    LINC02751provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2751provided by HGNC
    Primary source
    HGNC:HGNC:54271
    See related
    Ensembl:ENSG00000254946 AllianceGenome:HGNC:54271
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    all
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    Genomic context

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    See LINC02751 in Genome Data Viewer
    Location:
    11p15.2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (15552773..15705372)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (15650716..15803308)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (15574319..15726918)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:15096041-15096542 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3176 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3177 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4478 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:15135643-15136176 Neighboring gene calcitonin related polypeptide beta Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:15196965-15197488 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:15197489-15198010 Neighboring gene INSC spindle orientation adaptor protein Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3178 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:15260043-15260544 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:15260545-15261044 Neighboring gene NANOG hESC enhancer GRCh37_chr11:15363023-15363618 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:15454895-15455061 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:15467942-15469141 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:15581971-15582472 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:15583102-15584301 Neighboring gene VISTA enhancer hs692 Neighboring gene uncharacterized LOC105376568 Neighboring gene MPRA-validated peak1210 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr11:15610492-15610993 Neighboring gene NANOG hESC enhancer GRCh37_chr11:15643853-15644482 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3179 Neighboring gene uncharacterized LOC105376567 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:15732871-15733685 Neighboring gene uncharacterized LOC107984370 Neighboring gene uncharacterized LOC124902800

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Multistage genome-wide association meta-analyses identified two new loci for bone mineral density. Zhang L, et al. Hum Mol Genet, 2014 Apr 1. PMID 24249740, Free PMC Article
    2. Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies. Rivadeneira F, et al. Nat Genet, 2009 Nov. PMID 19801982, Free PMC Article
    3. Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. Estrada K, et al. Nat Genet, 2012 Apr 15. PMID 22504420, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    General gene information

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    Homology

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_169502.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC073172, AC087379

    2. NR_169503.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC073172, AC087379

    3. NR_169504.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC073172
      Related
      ENST00000659618.1

    4. NR_169505.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC073172
      Related
      ENST00000660777.1

    5. NR_169506.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC073172

    6. NR_169507.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC073172, AC087379

    7. NR_169508.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC073172, AC087379

    8. NR_169509.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC073172, AC087379

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      15552773..15705372
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      15650716..15803308
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001293172.1: Suppressed sequence

      Description
      NM_001293172.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version

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