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    Usp42 ubiquitin specific peptidase 42 [ Cricetulus griseus (Chinese hamster) ]

    Gene ID: 100765020, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Usp42
    Gene description
    ubiquitin specific peptidase 42
    Locus tag
    I79_001645
    See related
    Ensembl:ENSCGRG00015014550
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cricetulus griseus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See Usp42 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613618.1 (185229..203014)
    104 current CriGri-PICRH-1.0 (GCF_003668045.3) 4 NC_048597.1 (80213280..80235085, complement)

    NW_003613618.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118238644 Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 1 Neighboring gene ankyrin repeat domain 61 Neighboring gene uncharacterized LOC113835466 Neighboring gene cytohesin 3 Neighboring gene family with sequence similarity 220 member A Neighboring gene Rac family small GTPase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 42

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CriGri_1.0 Primary Assembly

    Genomic

    1. NW_003613618.1 Reference CriGri_1.0 Primary Assembly

      Range
      185229..203014
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027441109.2 → XP_027296910.2  ubiquitin carboxyl-terminal hydrolase 42 isoform X1

      UniProtKB/TrEMBL
      A0A3L7HRS0, A0A8C2N778
      Conserved Domains (2) summary
      cd02661
      Location:109 → 409
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam05109
      Location:420 → 590
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    Alternate CriGri-PICRH-1.0

    Genomic

    1. NC_048597.1 Alternate CriGri-PICRH-1.0

      Range
      80213280..80235085 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027413585.2 → XP_027269386.1  ubiquitin carboxyl-terminal hydrolase 42 isoform X3

      UniProtKB/TrEMBL
      A0A3L7HRS0, A0A8C2N778
      Related
      ENSCGRP00015018934.1, ENSCGRT00015023331.2
      Conserved Domains (2) summary
      cd02661
      Location:109 → 409
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam05109
      Location:420 → 590
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    2. XM_035443147.1 → XP_035299038.1  ubiquitin carboxyl-terminal hydrolase 42 isoform X2

      UniProtKB/TrEMBL
      A0A061I7T0, A0A8C2N778
      Related
      ENSCGRP00015041168.1, ENSCGRT00015062314.1
      Conserved Domains (2) summary
      cd02661
      Location:109 → 409
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam05109
      Location:420 → 590
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    Nucleotide Protein Strain
    Heading Accession and Version

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