U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    OR4D2 olfactory receptor family 4 subfamily D member 2 [ Homo sapiens (human) ]

    Gene ID: 124538, updated on 2-Nov-2024

    Summary

    Official Symbol
    OR4D2provided by HGNC
    Official Full Name
    olfactory receptor family 4 subfamily D member 2provided by HGNC
    Primary source
    HGNC:HGNC:8294
    See related
    Ensembl:ENSG00000255713 AllianceGenome:HGNC:8294
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    BC2009; OR17-24
    Summary
    Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. [provided by RefSeq, Jul 2008]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See OR4D2 in Genome Data Viewer
    Location:
    17q22
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (58166982..58171116)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (59034873..59039008)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (56244343..56248477)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 5901 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8758 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8759 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8760 Neighboring gene dynein light chain LC8-type 2 Neighboring gene Sharpr-MPRA regulatory region 5260 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:56219338-56219838 Neighboring gene olfactory receptor family 4 subfamily D member 1 Neighboring gene msh homeobox 2 pseudogene 1 Neighboring gene MPRA-validated peak2916 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:56261589-56262182 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:56277441-56278284 Neighboring gene NANOG hESC enhancer GRCh37_chr17:56286020-56286521 Neighboring gene eosinophil peroxidase Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12461 Neighboring gene MKS transition zone complex subunit 1

    Genomic regions, transcripts, and products

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables olfactory receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane TAS
    Traceable Author Statement
    more info
     

    General protein information

    Preferred Names
    olfactory receptor 4D2
    Names
    B-lymphocyte membrane protein BC2009
    G-protein coupled membrane protein
    olfactory receptor OR17-24

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004707.4NP_001004707.1  olfactory receptor 4D2

      See identical proteins and their annotated locations for NP_001004707.1

      Status: VALIDATED

      Source sequence(s)
      AC005962
      Consensus CDS
      CCDS32688.1
      UniProtKB/Swiss-Prot
      P58180, Q6IFN8, Q96R75
      UniProtKB/TrEMBL
      A0A126GWJ5, A0A126GWK0, A0A126GWL8
      Related
      ENSP00000441354.1, ENST00000545221.2
      Conserved Domains (2) summary
      pfam00001
      Location:41287
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl21561
      Location:31301
      7tm_4; Olfactory receptor

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      58166982..58171116
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      59034873..59039008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)