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    Pbdc1 polysaccharide biosynthesis domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 67683, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Pbdc1provided by MGI
    Official Full Name
    polysaccharide biosynthesis domain containing 1provided by MGI
    Primary source
    MGI:MGI:1914933
    See related
    Ensembl:ENSMUSG00000031226 AllianceGenome:MGI:1914933
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2610029G23Rik
    Summary
    Orthologous to human PBDC1 (polysaccharide biosynthesis domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in CNS E11.5 (RPKM 9.4), liver E14 (RPKM 5.5) and 25 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Pbdc1 in Genome Data Viewer
    Location:
    X D; X 46.83 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (104123337..104160696)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (105079731..105117094)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 5530601H04 gene Neighboring gene swi5-dependent recombination DNA repair protein 1 homolog Neighboring gene STARR-positive B cell enhancer ABC_E11053 Neighboring gene MAGE family member E1 Neighboring gene predicted gene, 45946

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
    2. Mouse screen reveals multiple new genes underlying mouse and human hearing loss. Ingham NJ, et al. PLoS Biol, 2019 Apr. PMID 30973865, Free PMC Article
    3. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    4. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
    5. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (1) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein PBDC1
    Names
    UPF0368 protein Cxorf26 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001281871.1 → NP_001268800.1  protein PBDC1 isoform 2

      See identical proteins and their annotated locations for NP_001268800.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon and contains an alternate 3' exon, resulting in a distinct 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (2) is shorter and has a distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AK076889, AL671897, BM898616
      Consensus CDS
      CCDS72419.1
      UniProtKB/Swiss-Prot
      Q9D0B6
      Related
      ENSMUSP00000113288.2, ENSMUST00000119477.2
      Conserved Domains (1) summary
      cl04661
      Location:35 → 137
      Polysacc_synt_4; Polysaccharide biosynthesis

    2. NM_026312.5 → NP_080588.1  protein PBDC1 isoform 1

      See identical proteins and their annotated locations for NP_080588.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK030507, AL671897, BY389180
      Consensus CDS
      CCDS30334.1
      UniProtKB/Swiss-Prot
      B1AUP5, Q8C5Z2, Q9CVL0, Q9D0B6
      Related
      ENSMUSP00000033577.5, ENSMUST00000033577.11
      Conserved Domains (1) summary
      pfam04669
      Location:35 → 158
      Polysacc_synt_4; Polysaccharide biosynthesis

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      104123337..104160696
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528267.4 → XP_006528330.1  protein PBDC1 isoform X3

      Conserved Domains (1) summary
      pfam04669
      Location:35 → 136
      Polysacc_synt_4; Polysaccharide biosynthesis

    2. XM_006528266.4 → XP_006528329.1  protein PBDC1 isoform X2

      Conserved Domains (1) summary
      pfam04669
      Location:35 → 136
      Polysacc_synt_4; Polysaccharide biosynthesis

    3. XM_006528269.4 → XP_006528332.1  protein PBDC1 isoform X5

      Conserved Domains (1) summary
      pfam04669
      Location:35 → 136
      Polysacc_synt_4; Polysaccharide biosynthesis

    4. XM_006528270.3 → XP_006528333.1  protein PBDC1 isoform X6

      Conserved Domains (1) summary
      pfam04669
      Location:35 → 136
      Polysacc_synt_4; Polysaccharide biosynthesis

    5. XM_006528268.4 → XP_006528331.1  protein PBDC1 isoform X4

      Conserved Domains (1) summary
      pfam04669
      Location:35 → 136
      Polysacc_synt_4; Polysaccharide biosynthesis

    6. XM_006528265.3 → XP_006528328.1  protein PBDC1 isoform X1

      Conserved Domains (1) summary
      cl04661
      Location:35 → 136
      Polysacc_synt_4; Polysaccharide biosynthesis

    RNA

    1. XR_003953024.1 RNA Sequence

    2. XR_386928.4 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D0B6.1 GenPept UniProtKB/Swiss-Prot:Q9D0B6

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