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    LOC115213083 neuronal acetylcholine receptor subunit alpha-6 [ Octopus sinensis (East Asian common octopus) ]

    Gene ID: 115213083, updated on 4-Jul-2024

    Summary

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    Gene symbol
    LOC115213083
    Gene description
    neuronal acetylcholine receptor subunit alpha-6
    See related
    EnsemblRapid:LOC115213083
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Octopus sinensis
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Cephalopoda; Coleoidea; Octopodiformes; Octopoda; Incirrata; Octopodidae; Octopus
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    Genomic context

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    See LOC115213083 in Genome Data Viewer
    Location:
    chromosome: LG6
    Exon count:
    11
    Annotation release Status Assembly LG Location
    101 current ASM634580v1 (GCF_006345805.1) LG6 NC_043002.1 (120030220..120387839)

    Linkage Group LG6 - NC_043002.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118763771 Neighboring gene uncharacterized LOC115213345 Neighboring gene uncharacterized LOC118764039

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_043002.1 Chromosome LG6 Reference ASM634580v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular ligand-gated monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables neurotransmitter receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nervous system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of membrane potential IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neuronal acetylcholine receptor subunit alpha-5; neuronal acetylcholine receptor subunit alpha-6; neuronal acetylcholine receptor subunit beta-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Octopus sinensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM634580v1 Primary Assembly

    Genomic

    1. NC_043002.1 Reference ASM634580v1 Primary Assembly

      Range
      120030220..120387839
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029782002.2 → XP_029637862.2  neuronal acetylcholine receptor subunit beta-3 isoform X1

      Related
      XP_029637862.2, XM_029782002.2
      Conserved Domains (3) summary
      cd18989
      Location:70 → 253
      LGIC_ECD_cation; extracellular domain (LBD) of cationic Cys-loop neurotransmitter-gated ion channels
      cd03559
      Location:287 → 308
      LGIC_TM; TM2 helix [structural motif]
      cl38911
      Location:277 → 351
      LGIC_TM; transmembrane domain of Cys-loop neurotransmitter-gated ion channels

    2. XM_036504309.1 → XP_036360202.1  neuronal acetylcholine receptor subunit beta-3 isoform X2

      Related
      XP_036360202.1, XM_036504309.1
      Conserved Domains (3) summary
      cd18989
      Location:70 → 253
      LGIC_ECD_cation; extracellular domain (LBD) of cationic Cys-loop neurotransmitter-gated ion channels
      cd03559
      Location:287 → 308
      LGIC_TM; TM2 helix [structural motif]
      cl38911
      Location:277 → 343
      LGIC_TM; transmembrane domain of Cys-loop neurotransmitter-gated ion channels

    3. XM_036504310.1 → XP_036360203.1  neuronal acetylcholine receptor subunit beta-3 isoform X3

      Related
      XP_036360203.1, XM_036504310.1
      Conserved Domains (3) summary
      cd18989
      Location:55 → 238
      LGIC_ECD_cation; extracellular domain (LBD) of cationic Cys-loop neurotransmitter-gated ion channels
      cd03559
      Location:272 → 293
      LGIC_TM; TM2 helix [structural motif]
      cl38911
      Location:262 → 336
      LGIC_TM; transmembrane domain of Cys-loop neurotransmitter-gated ion channels

    4. XM_036504312.1 → XP_036360205.1  neuronal acetylcholine receptor subunit alpha-6 isoform X5

      Related
      XP_036360205.1, XM_036504312.1
      Conserved Domains (3) summary
      cd18989
      Location:70 → 253
      LGIC_ECD_cation; extracellular domain (LBD) of cationic Cys-loop neurotransmitter-gated ion channels
      cd03559
      Location:287 → 308
      LGIC_TM; TM2 helix [structural motif]
      cl38911
      Location:277 → 321
      LGIC_TM; transmembrane domain of Cys-loop neurotransmitter-gated ion channels

    5. XM_036504311.1 → XP_036360204.1  neuronal acetylcholine receptor subunit alpha-5 isoform X4

      Related
      XP_036360204.1, XM_036504311.1
      Conserved Domains (3) summary
      cd18989
      Location:12 → 195
      LGIC_ECD_cation; extracellular domain (LBD) of cationic Cys-loop neurotransmitter-gated ion channels
      cd03559
      Location:229 → 250
      LGIC_TM; TM2 helix [structural motif]
      cl38911
      Location:219 → 293
      LGIC_TM; transmembrane domain of Cys-loop neurotransmitter-gated ion channels
    Nucleotide Protein
    Heading Accession and Version

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