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    LOC110523030 cilia- and flagella-associated protein 57 [ Oncorhynchus mykiss (rainbow trout) ]

    Gene ID: 110523030, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC110523030
    Gene description
    cilia- and flagella-associated protein 57
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus mykiss
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC110523030 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current USDA_OmykA_1.1 (GCF_013265735.2) 5 NC_048569.1 (88268194..88289087)
    100 previous assembly Omyk_1.0 (GCF_002163495.1) 5 NC_035081.1 (82429087..82451778)

    Chromosome 5 - NC_048569.1Genomic Context describing neighboring genes Neighboring gene doublesex and mab-3 related transcription factor 2b Neighboring gene probable rRNA-processing protein EBP2 Neighboring gene cilia and flagella associated protein 144 Neighboring gene transmembrane protein 125 Neighboring gene adaptor related protein complex 1 subunit mu 3 Neighboring gene uncharacterized LOC118964681 Neighboring gene chromosome 5 C1orf210 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: cilia- and flagella-associated protein 57

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_OmykA_1.1 Primary Assembly

    Genomic

    1. NC_048569.1 Reference USDA_OmykA_1.1 Primary Assembly

      Range
      88268194..88289087
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036979078.1 → XP_036834973.1  LOW QUALITY PROTEIN: cilia- and flagella-associated protein 57

      Conserved Domains (2) summary
      COG1196
      Location:404 → 685
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam16046
      Location:297 → 496
      FAM76; FAM76 protein
    Nucleotide Protein
    Heading Accession and Version

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