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    LOC108424533 ankyrin repeat and SOCS box protein 2-like [ Pygocentrus nattereri (red-bellied piranha) ]

    Gene ID: 108424533, updated on 18-Jun-2024

    Summary

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    Gene symbol
    LOC108424533
    Gene description
    ankyrin repeat and SOCS box protein 2-like
    See related
    Ensembl:ENSPNAG00000009519 Ensembl:ENSPNAG00000009543 Ensembl:ENSPNAG00000009608
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pygocentrus nattereri
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus
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    Genomic context

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    See LOC108424533 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    101 current fPygNat1.pri (GCF_015220715.1) 4 NC_051214.1 (38409809..38452876, complement)
    100 previous assembly Pygocentrus_nattereri-1.0.2 (GCF_001682695.1) Unplaced Scaffold NW_016243778.1 (4184265..4197647)

    Chromosome 4 - NC_051214.1Genomic Context describing neighboring genes Neighboring gene proline rich membrane anchor 1 Neighboring gene ankyrin repeat and SOCS box protein 2-like Neighboring gene uncharacterized LOC119263217 Neighboring gene protein phosphatase 4, regulatory subunit 4 Neighboring gene serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10a Neighboring gene peripherin 2-like b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to ciliary inversin compartment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ciliary inversin compartment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ankyrin repeat and SOCS box protein 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pygocentrus nattereri Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fPygNat1.pri

    Genomic

    1. NC_051214.1 Reference fPygNat1.pri

      Range
      38409809..38452876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037537709.1 → XP_037393606.1  ankyrin repeat and SOCS box protein 2-like isoform X2

      UniProtKB/TrEMBL
      A0A3B4BX47
      Conserved Domains (4) summary
      PHA02876
      Location:221 → 562
      PHA02876; ankyrin repeat protein; Provisional
      TIGR00601
      Location:84 → 172
      rad23; UV excision repair protein Rad23
      sd00045
      Location:331 → 361
      ANK; ANK repeat [structural motif]
      cl02533
      Location:681 → 724
      SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...

    2. XM_037537708.1 → XP_037393605.1  ankyrin repeat and SOCS box protein 2-like isoform X1

      UniProtKB/TrEMBL
      A0A3B4BX47
      Conserved Domains (5) summary
      PHA03095
      Location:267 → 635
      PHA03095; ankyrin-like protein; Provisional
      TIGR00601
      Location:84 → 172
      rad23; UV excision repair protein Rad23
      sd00045
      Location:331 → 361
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:205 → 295
      Ank_2; Ankyrin repeats (3 copies)
      cl02533
      Location:698 → 741
      SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...

    3. XM_037537711.1 → XP_037393608.1  ankyrin repeat and SOCS box protein 2-like isoform X4

      UniProtKB/TrEMBL
      A0A3B4BX47
      Conserved Domains (5) summary
      PHA03095
      Location:233 → 601
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:297 → 327
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:171 → 261
      Ank_2; Ankyrin repeats (3 copies)
      cl02533
      Location:664 → 707
      SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...
      cl40703
      Location:75 → 129
      Trypan_PARP; Procyclic acidic repetitive protein (PARP)

    4. XM_017692616.2 → XP_017548105.1  ankyrin repeat and SOCS box protein 2-like isoform X5

      UniProtKB/TrEMBL
      A0A3B4BX47, A0A3B4DK93
      Related
      ENSPNAP00000024802.1, ENSPNAT00000009239.2

    5. XM_037537712.1 → XP_037393609.1  ankyrin repeat and SOCS box protein 2-like isoform X6

      UniProtKB/TrEMBL
      A0A3B4BXB1, A0A3B4DKE7
      Conserved Domains (4) summary
      PHA02876
      Location:215 → 536
      PHA02876; ankyrin repeat protein; Provisional
      COG0666
      Location:105 → 303
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd03716
      Location:627 → 668
      SOCS_ASB_like; SOCS (suppressors of cytokine signaling) box of ASB (ankyrin repeat and SOCS box) and SSB (SPRY domain-containing SOCS box proteins) protein families. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence of a variable ...
      sd00045
      Location:273 → 303
      ANK; ANK repeat [structural motif]

    6. XM_037537710.1 → XP_037393607.1  ankyrin repeat and SOCS box protein 2-like isoform X3

      UniProtKB/TrEMBL
      A0A3B4DKE7
      Conserved Domains (4) summary
      PHA02876
      Location:271 → 592
      PHA02876; ankyrin repeat protein; Provisional
      COG0666
      Location:161 → 359
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd03716
      Location:683 → 724
      SOCS_ASB_like; SOCS (suppressors of cytokine signaling) box of ASB (ankyrin repeat and SOCS box) and SSB (SPRY domain-containing SOCS box proteins) protein families. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence of a variable ...
      sd00045
      Location:329 → 359
      ANK; ANK repeat [structural motif]

    7. XM_017692612.2 → XP_017548101.1  ankyrin repeat and SOCS box protein 2-like isoform X6

      UniProtKB/TrEMBL
      A0A3B4BXB1, A0A3B4DKE7
      Related
      ENSPNAP00000003191.1, ENSPNAT00000009141.2
      Conserved Domains (4) summary
      PHA02876
      Location:215 → 536
      PHA02876; ankyrin repeat protein; Provisional
      COG0666
      Location:105 → 303
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd03716
      Location:627 → 668
      SOCS_ASB_like; SOCS (suppressors of cytokine signaling) box of ASB (ankyrin repeat and SOCS box) and SSB (SPRY domain-containing SOCS box proteins) protein families. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence of a variable ...
      sd00045
      Location:273 → 303
      ANK; ANK repeat [structural motif]

    8. XM_037537713.1 → XP_037393610.1  ankyrin repeat and SOCS box protein 2-like isoform X7

      Related
      ENSPNAP00000077750.1, ENSPNAT00000074276.1
      Conserved Domains (4) summary
      cd03716
      Location:548 → 587
      SOCS_ASB_like; SOCS (suppressors of cytokine signaling) box of ASB (ankyrin repeat and SOCS box) and SSB (SPRY domain-containing SOCS box proteins) protein families. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence of a variable ...
      sd00045
      Location:191 → 222
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:60 → 154
      Ank_2; Ankyrin repeats (3 copies)
      cl39094
      Location:118 → 311
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
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