U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    Nudt9 nudix hydrolase 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 305149, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Nudt9provided by RGD
    Official Full Name
    nudix hydrolase 9provided by RGD
    Primary source
    RGD:1359522
    See related
    EnsemblRapid:ENSRNOG00000002186 AllianceGenome:RGD:1359522
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable ADP-ribose diphosphatase activity. Predicted to act upstream of or within ADP catabolic process. Predicted to be located in cell junction; nuclear body; and nuclear membrane. Predicted to be active in mitochondrion. Orthologous to human NUDT9 (nudix hydrolase 9). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 144.3), Brain (RPKM 103.7) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Nudt9 in Genome Data Viewer
    Location:
    14p22
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (5980042..5997998, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (5675376..5693332, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (7036809..7054739, complement)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene SPARC like 1 Neighboring gene secretory calcium-binding phosphoprotein proline-glutamine rich 1 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 11 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 13 Neighboring gene uncharacterized LOC120096561 Neighboring gene kelch-like family member 8

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The crystal structure and mutational analysis of human NUDT9. Shen BW, et al. J Mol Biol, 2003 Sep 12. PMID 12948489
    2. NUDT9, a member of the Nudix hydrolase family, is an evolutionarily conserved mitochondrial ADP-ribose pyrophosphatase. Perraud AL, et al. J Biol Chem, 2003 Jan 17. PMID 12427752
    3. Cloning, expression and characterisation of a human Nudix hydrolase specific for adenosine 5'-diphosphoribose (ADP-ribose). Lin S, et al. Biochim Biophys Acta, 2002 Jan 31. PMID 11825615
    4. Proteomic analysis of human parotid gland exosomes by multidimensional protein identification technology (MudPIT). Gonzalez-Begne M, et al. J Proteome Res, 2009 Mar. PMID 19199708, Free PMC Article
    5. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, et al. Cell, 2003 Nov 26. PMID 14651853

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC94618

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables ADP-ribose diphosphatase activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within ADP catabolic process ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in cell junction IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cell junction ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nuclear body IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nuclear body ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nuclear membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nuclear membrane ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ADP-ribose pyrophosphatase, mitochondrial
    Names
    ADP-ribose diphosphatase
    ADP-ribose phosphohydrolase
    ADPR-PPase
    adenosine diphosphoribose pyrophosphatase
    nucleoside diphosphate-linked moiety X motif 9
    nudix (nucleoside diphosphate linked moiety X)-type motif 9
    nudix motif 9
    nudix-type motif 9
    NP_001006992.1
    XP_006250692.1
    XP_006250693.1
    XP_017454652.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006991.1 → NP_001006992.1  ADP-ribose pyrophosphatase, mitochondrial

      See identical proteins and their annotated locations for NP_001006992.1

      Status: PROVISIONAL

      Source sequence(s)
      BC083722
      UniProtKB/Swiss-Prot
      Q5XIG0
      Related
      ENSRNOP00000002973.3, ENSRNOT00000002973.6
      Conserved Domains (1) summary
      cd03670
      Location:149 → 335
      ADPRase_NUDT9; ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also ...

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      5980042..5997998 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006250630.4 → XP_006250692.1  ADP-ribose pyrophosphatase, mitochondrial isoform X1

      See identical proteins and their annotated locations for XP_006250692.1

      UniProtKB/TrEMBL
      A6K5T5
      Conserved Domains (1) summary
      cd03670
      Location:99 → 285
      ADPRase_NUDT9; ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also ...

    2. XM_006250631.5 → XP_006250693.1  ADP-ribose pyrophosphatase, mitochondrial isoform X1

      See identical proteins and their annotated locations for XP_006250693.1

      UniProtKB/TrEMBL
      A6K5T5
      Related
      ENSRNOP00000105881.1, ENSRNOT00000155501.1
      Conserved Domains (1) summary
      cd03670
      Location:99 → 285
      ADPRase_NUDT9; ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also ...

    3. XM_017599163.3 → XP_017454652.1  ADP-ribose pyrophosphatase, mitochondrial isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5XIG0.1 GenPept UniProtKB/Swiss-Prot:Q5XIG0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous