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    LOC120198646 probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [ Hibiscus syriacus ]

    Gene ID: 120198646, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120198646
    Gene description
    probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hibiscus syriacus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus
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    Genomic context

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    See LOC120198646 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current ASM638163v2 (GCF_006381635.1) Unplaced Scaffold NW_024063539.1 (6563298..6568099)

    NW_024063539.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120198429 Neighboring gene nucleotide-sugar uncharacterized transporter 2-like Neighboring gene DNA-directed RNA polymerases I and III subunit RPAC1-like Neighboring gene serine/threonine-protein kinase D6PK-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024063539 Unplaced Scaffold Reference ASM638163v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables rRNA (cytosine-C5-)-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA base methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hibiscus syriacus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM638163v2 Primary Assembly

    Genomic

    1. NW_024063539.1 Reference ASM638163v2 Primary Assembly

      Range
      6563298..6568099
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039199950.1 → XP_039055881.1  LOW QUALITY PROTEIN: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase

      UniProtKB/TrEMBL
      A0A6A2WWN3
      Conserved Domains (1) summary
      COG0144
      Location:178 → 515
      RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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