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    HNRNPA3P1 heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 10151, updated on 17-Sep-2024

    Summary

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    Official Symbol
    HNRNPA3P1provided by HGNC
    Official Full Name
    heterogeneous nuclear ribonucleoprotein A3 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:13729
    See related
    AllianceGenome:HGNC:13729
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FBRNP; HNRPA3; D10S102; HNRPA3P1
    Summary
    This locus shares sequence similarity with heterogeneous nuclear ribonuclear proteins and represents an apparent transcribed pseudogene of the HNRPA3 gene, which maps to chromosome 2. [provided by RefSeq, Jul 2008]
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    Genomic context

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    See HNRNPA3P1 in Genome Data Viewer
    Location:
    10q11.21
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (43787412..43790417, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (44668282..44671287, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (44282860..44285865, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene elongin C pseudogene 30 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44249197-44249908 Neighboring gene uncharacterized LOC105378275 Neighboring gene long intergenic non-protein coding RNA 2658 Neighboring gene MPRA-validated peak936 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12499 Neighboring gene long intergenic non-protein coding RNA 619 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44358448-44358948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44358949-44359449 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12564 Neighboring gene long intergenic non-protein coding RNA 840 Neighboring gene Sharpr-MPRA regulatory region 2960 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12586 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:44372279-44372466

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of a cDNA, which is highly homologous to the ribonucleoprotein gene, from a locus (D10S102) closely linked to MEN2 (multiple endocrine neoplasia type 2). Takiguchi S, et al. Cytogenet Cell Genet, 1993. PMID 8101480
    2. A 1.5-megabase yeast artificial chromosome contig from human chromosome 10q11.2 connecting three genetic loci (RET, D10S94, and D10S102) closely linked to the MEN2A locus. Lairmore TC, et al. Proc Natl Acad Sci U S A, 1993 Jan 15. PMID 8093642, Free PMC Article
    3. Deregulated expression of hnRNP A/B proteins in human non-small cell lung cancer: parallel assessment of protein and mRNA levels in paired tumour/non-tumour tissues. Boukakis G, et al. BMC Cancer, 2010 Aug 17. PMID 20716340, Free PMC Article
    4. Heterogeneous nuclear ribonucleoprotein A3, a novel RNA trafficking response element-binding protein. Ma AS, et al. J Biol Chem, 2002 May 17. PMID 11886857
    5. HnRNP A3 genes and pseudogenes in the vertebrate genomes. Makeyev AV, et al. J Exp Zool A Comp Exp Biol, 2005 Apr 1. PMID 15776420

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Over-expression of hnRNP A3 is associated with non-small cell lung cancer.
      Title: Deregulated expression of hnRNP A/B proteins in human non-small cell lung cancer: parallel assessment of protein and mRNA levels in paired tumour/non-tumour tissues.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association study link novel loci to endometriosis.
    EBI GWAS Catalog

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002726.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL355989

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      43787412..43790417 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      44668282..44671287 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_005758.1: Suppressed sequence

      Description
      NM_005758.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials