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    hif1aa hypoxia inducible factor 1 subunit alpha a [ Melanotaenia boesemani (Boeseman's rainbowfish) ]

    Gene ID: 121630690, updated on 22-Mar-2024

    Summary

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    Gene symbol
    hif1aa
    Gene description
    hypoxia inducible factor 1 subunit alpha a
    See related
    EnsemblRapid:ENSMBOG00000013346
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Melanotaenia boesemani
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Atheriniformes; Melanotaeniidae; Melanotaenia
    Orthologs
    human zebrafish all
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    Genomic context

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    See hif1aa in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current fMelBoe1.pri (GCF_017639745.1) 20 NC_055701.1 (13441057..13456920)

    Chromosome 20 - NC_055701.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 38 member 6 Neighboring gene protein kinase C, eta, a Neighboring gene serine protease HTRA2, mitochondrial-like Neighboring gene MIS18 binding protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_055701.1 Chromosome 20 Reference fMelBoe1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to hypoxia IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hypoxia inducible factor 1 subunit alpha a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Melanotaenia boesemani Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fMelBoe1.pri Primary Assembly

    Genomic

    1. NC_055701.1 Reference fMelBoe1.pri Primary Assembly

      Range
      13441057..13456920
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041971108.1 → XP_041827042.1  hypoxia inducible factor 1 subunit alpha a

      Related
      ENSMBOP00000031501.1, ENSMBOT00000032062.1
      Conserved Domains (3) summary
      smart00091
      Location:88 → 151
      PAS; PAS domain
      pfam08447
      Location:252 → 339
      PAS_3; PAS fold
      cl00081
      Location:12 → 82
      bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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