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    LOC112214404 regulator of nonsense transcripts 2-like [ Oncorhynchus tshawytscha (Chinook salmon) ]

    Gene ID: 112214404, updated on 18-Jun-2024

    Summary

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    Gene symbol
    LOC112214404
    Gene description
    regulator of nonsense transcripts 2-like
    See related
    Ensembl:ENSOTSG00005009583
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus tshawytscha
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC112214404 in Genome Data Viewer
    Location:
    chromosome: LG15
    Exon count:
    24
    Annotation release Status Assembly LG Location
    101 current Otsh_v2.0 (GCF_018296145.1) LG15 NC_056443.1 (11248508..11269245)
    100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 15 NC_037111.1 (13236271..13257199)

    Linkage Group LG15 - NC_056443.1Genomic Context describing neighboring genes Neighboring gene putative violet-sensitive opsin Neighboring gene calumenin-A Neighboring gene flocculation protein FLO11 Neighboring gene serine-threonine kinase receptor-associated protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of exon-exon junction complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    regulator of nonsense transcripts 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Otsh_v2.0 Primary Assembly

    Genomic

    1. NC_056443.1 Reference Otsh_v2.0 Primary Assembly

      Range
      11248508..11269245
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042298149.1 → XP_042154083.1  regulator of nonsense transcripts 2-like isoform X8

      UniProtKB/TrEMBL
      A0A8C8MJD3
      Related
      ENSOTSP00005111676.1, ENSOTST00005136783.1
      Conserved Domains (1) summary
      smart00543
      Location:773 → 986
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)

    2. XM_042298150.1 → XP_042154084.1  regulator of nonsense transcripts 2-like isoform X8

      UniProtKB/TrEMBL
      A0A8C8MJD3
      Conserved Domains (1) summary
      smart00543
      Location:773 → 986
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)

    3. XM_042298148.1 → XP_042154082.1  regulator of nonsense transcripts 2-like isoform X7

      UniProtKB/TrEMBL
      A0A8C8MJD3
      Related
      ENSOTSP00005130200.1, ENSOTST00005189424.1
      Conserved Domains (1) summary
      smart00543
      Location:773 → 986
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)

    4. XM_042298151.1 → XP_042154085.1  regulator of nonsense transcripts 2-like isoform X9

      UniProtKB/TrEMBL
      A0A8C8MJD3
      Related
      ENSOTSP00005019734.2, ENSOTST00005021453.2
      Conserved Domains (1) summary
      smart00543
      Location:773 → 986
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)

    5. XM_042298142.1 → XP_042154076.1  regulator of nonsense transcripts 2-like isoform X1

      UniProtKB/TrEMBL
      A0A8C8MJD3
      Conserved Domains (1) summary
      smart00543
      Location:773 → 986
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)

    6. XM_042298143.1 → XP_042154077.1  regulator of nonsense transcripts 2-like isoform X2

      UniProtKB/TrEMBL
      A0A8C8MJD3
      Conserved Domains (1) summary
      smart00543
      Location:773 → 986
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)

    7. XM_042298145.1 → XP_042154079.1  regulator of nonsense transcripts 2-like isoform X4

      UniProtKB/TrEMBL
      A0A8C8MJD3
      Related
      ENSOTSP00005019737.2, ENSOTST00005021456.2
      Conserved Domains (1) summary
      smart00543
      Location:769 → 982
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)

    8. XM_042298146.1 → XP_042154080.1  regulator of nonsense transcripts 2-like isoform X5

      UniProtKB/TrEMBL
      A0A8C8MJD3
      Conserved Domains (1) summary
      smart00543
      Location:769 → 982
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)

    9. XM_042298144.1 → XP_042154078.1  regulator of nonsense transcripts 2-like isoform X3

      UniProtKB/TrEMBL
      A0A8C8MJD3
      Conserved Domains (1) summary
      smart00543
      Location:771 → 984
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)

    10. XM_042298147.1 → XP_042154081.1  regulator of nonsense transcripts 2-like isoform X6

      UniProtKB/TrEMBL
      A0A8C8MJD3
      Conserved Domains (1) summary
      smart00543
      Location:767 → 980
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    Nucleotide Protein
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