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    foxn1 forkhead box N1 [ Clupea harengus (Atlantic herring) ]

    Gene ID: 105898182, updated on 13-Mar-2024

    Summary

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    Gene symbol
    foxn1
    Gene description
    forkhead box N1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Clupea harengus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
    Orthologs
    human zebrafish all
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    Genomic context

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    See foxn1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current Ch_v2.0.2 (GCF_900700415.2) 9 NC_045160.1 (6676689..6686093)

    Chromosome 9 - NC_045160.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 46 member 1 Neighboring gene rab proteins geranylgeranyltransferase component A 2-like Neighboring gene solute carrier family 13 member 5 Neighboring gene unc-119 lipid binding chaperone a1 Neighboring gene crystallin, beta B1, like 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045160.1 Chromosome 9 Reference Ch_v2.0.2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    forkhead box protein N1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ch_v2.0.2 Primary Assembly

    Genomic

    1. NC_045160.1 Reference Ch_v2.0.2 Primary Assembly

      Range
      6676689..6686093
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031574139.2 → XP_031429999.1  forkhead box protein N1

      UniProtKB/TrEMBL
      A0A6P8FTP2
      Conserved Domains (1) summary
      pfam00250
      Location:139 → 226
      Forkhead; Forkhead domain
    Nucleotide Protein
    Heading Accession and Version

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