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    LOC122997430 interferon-induced, double-stranded RNA-activated protein kinase-like [ Thunnus albacares (yellowfin tuna) ]

    Gene ID: 122997430, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC122997430
    Gene description
    interferon-induced, double-stranded RNA-activated protein kinase-like
    See related
    EnsemblRapid:ENSTABG00005006579
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Thunnus albacares
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus
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    Genomic context

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    See LOC122997430 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current fThuAlb1.1 (GCF_914725855.1) 14 NC_058119.1 (9647855..9656492, complement)

    Chromosome 14 - NC_058119.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122997102 Neighboring gene interferon-induced, double-stranded RNA-activated protein kinase-like Neighboring gene uncharacterized LOC122997348 Neighboring gene G patch domain containing 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058119.1 Chromosome 14 Reference fThuAlb1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    interferon-induced, double-stranded RNA-activated protein kinase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Thunnus albacares Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fThuAlb1.1

    Genomic

    1. NC_058119.1 Reference fThuAlb1.1

      Range
      9647855..9656492 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044373550.1 → XP_044229485.1  interferon-induced, double-stranded RNA-activated protein kinase-like

      Related
      ENSTABP00005016150.1, ENSTABT00005016307.1
      Conserved Domains (4) summary
      smart00358
      Location:8 → 73
      DSRM; Double-stranded RNA binding motif
      cd20314
      Location:103 → 169
      DSRM_EIF2AK2; double-stranded RNA binding motif of eukaryotic translation initiation factor 2-alpha kinase 2 (EIF2AK2) and similar proteins
      cl00054
      Location:182 → 248
      DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
      cl21453
      Location:379 → 661
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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