U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    USP28 ubiquitin specific peptidase 28 [ Homo sapiens (human) ]

    Gene ID: 57646, updated on 9-May-2024

    Summary

    Official Symbol
    USP28provided by HGNC
    Official Full Name
    ubiquitin specific peptidase 28provided by HGNC
    Primary source
    HGNC:HGNC:12625
    See related
    Ensembl:ENSG00000048028 MIM:610748; AllianceGenome:HGNC:12625
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    The protein encoded by this gene is a deubiquitinase involved in the DNA damage pathway and DNA damage-induced apoptosis. Overexpression of this gene is seen in several cancers. [provided by RefSeq, Oct 2016]
    Expression
    Ubiquitous expression in heart (RPKM 11.8), lymph node (RPKM 4.2) and 24 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    11q23.2
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (113797875..113875572, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (113808211..113885899, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (113668597..113746294, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 37 member A13, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3911 Neighboring gene activating transcription factor 4 pseudogene 4 Neighboring gene ISG20L2 pseudogene 2 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:113720382-113720923 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:113720924-113721464 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:113721465-113722005 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:113722006-113722545 Neighboring gene RNA, U6 small nuclear 1107, pseudogene Neighboring gene U7 small nuclear RNA Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:113744182-113744682 Neighboring gene Sharpr-MPRA regulatory region 42 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:113746853-113747514 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5543 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:113752951-113753737 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:113756096-113756882 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:113766496-113766696 Neighboring gene 5-hydroxytryptamine receptor 3B Neighboring gene ReSE screen-validated silencer GRCh37_chr11:113813804-113813933 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:113822687-113823240 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:113827432-113828317 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:113835585-113836084 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:113845393-113846054 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:113846055-113846714 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:113859815-113860316 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:113860317-113860816 Neighboring gene 5-hydroxytryptamine receptor 3A

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Clone Names

    • KIAA1515

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables cysteine-type deubiquitinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables cysteine-type deubiquitinase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables cysteine-type deubiquitinase activity TAS
    Traceable Author Statement
    more info
     
    enables deubiquitinase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nuclear body IDA
    Inferred from Direct Assay
    more info
     
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of protein-containing complex IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 28
    Names
    deubiquitinating enzyme 28
    ubiquitin thioesterase 28
    ubiquitin thiolesterase 28
    ubiquitin-specific-processing protease 28
    NP_001287958.1
    NP_001333181.1
    NP_001333182.1
    NP_001333183.1
    NP_001333184.1
    NP_001333186.1
    NP_001333187.1
    NP_001333188.1
    NP_001333189.1
    NP_001333190.1
    NP_001333191.1
    NP_001333192.1
    NP_001333193.1
    NP_001333194.1
    NP_001333196.1
    NP_001333197.1
    NP_001333198.1
    NP_001333199.1
    NP_001333200.1
    NP_001333201.1
    NP_001333202.1
    NP_001387713.1
    NP_001387714.1
    NP_001387715.1
    NP_001387716.1
    NP_001387717.1
    NP_001387718.1
    NP_001387719.1
    NP_001387720.1
    NP_001387721.1
    NP_001387722.1
    NP_001387723.1
    NP_001387724.1
    NP_001387725.1
    NP_001387726.1
    NP_001387728.1
    NP_001387729.1
    NP_001387730.1
    NP_001387731.1
    NP_001387732.1
    NP_001387733.1
    NP_001387734.1
    NP_001387735.1
    NP_001387736.1
    NP_001387738.1
    NP_001387739.1
    NP_001387740.1
    NP_001387741.1
    NP_001387742.1
    NP_065937.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_051668.1 RefSeqGene

      Range
      4999..82696
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001301029.2 → NP_001287958.1  ubiquitin carboxyl-terminal hydrolase 28 isoform b

      See identical proteins and their annotated locations for NP_001287958.1

      Status: REVIEWED

      Source sequence(s)
      AK304770, AP001874, AP003170, BC035986, BF434481, DB061316
      Consensus CDS
      CCDS73394.1
      UniProtKB/TrEMBL
      B4E3L3, G3V1N5
      Related
      ENSP00000444991.1, ENST00000545540.5
      Conserved Domains (3) summary
      cd02665
      Location:38 → 523
      Peptidase_C19I; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl02553
      Location:38 → 142
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam00443
      Location:36 → 273
      UCH; Ubiquitin carboxyl-terminal hydrolase
    2. NM_001346252.4 → NP_001333181.1  ubiquitin carboxyl-terminal hydrolase 28 isoform c

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
      Consensus CDS
      CCDS91596.1
      UniProtKB/TrEMBL
      A0A8V8TLZ9
      Related
      ENSP00000513009.1, ENST00000696973.1
    3. NM_001346253.2 → NP_001333182.1  ubiquitin carboxyl-terminal hydrolase 28 isoform d

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    4. NM_001346254.2 → NP_001333183.1  ubiquitin carboxyl-terminal hydrolase 28 isoform e

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    5. NM_001346255.2 → NP_001333184.1  ubiquitin carboxyl-terminal hydrolase 28 isoform f

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    6. NM_001346257.2 → NP_001333186.1  ubiquitin carboxyl-terminal hydrolase 28 isoform g

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    7. NM_001346258.2 → NP_001333187.1  ubiquitin carboxyl-terminal hydrolase 28 isoform h

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
      UniProtKB/Swiss-Prot
      Q96RU2
    8. NM_001346259.2 → NP_001333188.1  ubiquitin carboxyl-terminal hydrolase 28 isoform i

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
      Conserved Domains (3) summary
      COG5207
      Location:136 → 608
      UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
      cd02665
      Location:137 → 622
      Peptidase_C19I; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cd20487
      Location:740 → 1019
      USP28_C; carboxyl-terminal domain of ubiquitin-specific protease 28 (USP28)
    9. NM_001346260.2 → NP_001333189.1  ubiquitin carboxyl-terminal hydrolase 28 isoform j

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    10. NM_001346261.2 → NP_001333190.1  ubiquitin carboxyl-terminal hydrolase 28 isoform k

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    11. NM_001346262.2 → NP_001333191.1  ubiquitin carboxyl-terminal hydrolase 28 isoform b

      Status: REVIEWED

      Description
      Transcript Variant: This variant (12), as well as variant 2, encodes isoform b.
      Source sequence(s)
      AP001874, AP003170, KF459544
      Consensus CDS
      CCDS73394.1
      UniProtKB/TrEMBL
      B4E3L3, G3V1N5
    12. NM_001346263.2 → NP_001333192.1  ubiquitin carboxyl-terminal hydrolase 28 isoform l

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
      UniProtKB/TrEMBL
      G3V1N5
    13. NM_001346264.2 → NP_001333193.1  ubiquitin carboxyl-terminal hydrolase 28 isoform m

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
      UniProtKB/TrEMBL
      G3V1N5
    14. NM_001346265.2 → NP_001333194.1  ubiquitin carboxyl-terminal hydrolase 28 isoform n

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
      UniProtKB/TrEMBL
      G3V1N5
    15. NM_001346267.2 → NP_001333196.1  ubiquitin carboxyl-terminal hydrolase 28 isoform o

      Status: REVIEWED

      Description
      Transcript Variant: This variant (16), as well as variant 17, encodes isoform o.
      Source sequence(s)
      AP001874, AP003170, KF459544
      UniProtKB/TrEMBL
      G3V1N5
    16. NM_001346268.2 → NP_001333197.1  ubiquitin carboxyl-terminal hydrolase 28 isoform o

      Status: REVIEWED

      Description
      Transcript Variant: This variant (17), as well as variant 16, encodes isoform o.
      Source sequence(s)
      AP001874, AP003170, KF459544
      UniProtKB/TrEMBL
      G3V1N5
    17. NM_001346269.2 → NP_001333198.1  ubiquitin carboxyl-terminal hydrolase 28 isoform p

      Status: REVIEWED

      Description
      Transcript Variant: This variant (18), as well as variants 19 and 20, encodes isoform p.
      Source sequence(s)
      AP001874, AP003170, KF459544
      UniProtKB/TrEMBL
      G3V1N5
    18. NM_001346270.2 → NP_001333199.1  ubiquitin carboxyl-terminal hydrolase 28 isoform p

      Status: REVIEWED

      Description
      Transcript Variant: This variant (19), as well as variants 18 and 20, encodes isoform p.
      Source sequence(s)
      AP001874, AP003170, KF459544
      UniProtKB/TrEMBL
      G3V1N5
    19. NM_001346271.2 → NP_001333200.1  ubiquitin carboxyl-terminal hydrolase 28 isoform p

      Status: REVIEWED

      Description
      Transcript Variant: This variant (20), as well as variants 18 and 19, encodes isoform p.
      Source sequence(s)
      AP001874, AP003170, KF459544
      UniProtKB/TrEMBL
      G3V1N5
    20. NM_001346272.2 → NP_001333201.1  ubiquitin carboxyl-terminal hydrolase 28 isoform q

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
      UniProtKB/TrEMBL
      G3V1N5
    21. NM_001346273.2 → NP_001333202.1  ubiquitin carboxyl-terminal hydrolase 28 isoform r

      Status: REVIEWED

      Source sequence(s)
      AP001874, BC065928, DB061316
      Consensus CDS
      CCDS86248.1
      UniProtKB/Swiss-Prot
      Q96RU2
      Related
      ENSP00000445743.1, ENST00000537706.5
      Conserved Domains (3) summary
      cd02665
      Location:163 → 397
      Peptidase_C19I; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cd14355
      Location:23 → 64
      UBA_UBP28; UBA domain found in ubiquitin carboxyl-terminal hydrolase 28 (UBP28) and similar proteins
      cl02553
      Location:163 → 267
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    22. NM_001400784.1 → NP_001387713.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 20

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    23. NM_001400785.1 → NP_001387714.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 21

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    24. NM_001400786.1 → NP_001387715.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 22

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    25. NM_001400787.1 → NP_001387716.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 23

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    26. NM_001400788.1 → NP_001387717.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 24

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    27. NM_001400789.1 → NP_001387718.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 25

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    28. NM_001400790.1 → NP_001387719.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 26

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    29. NM_001400791.1 → NP_001387720.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 27

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    30. NM_001400792.1 → NP_001387721.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 28

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    31. NM_001400793.1 → NP_001387722.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 29

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    32. NM_001400794.1 → NP_001387723.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 30

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170
    33. NM_001400795.1 → NP_001387724.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 31

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    34. NM_001400796.1 → NP_001387725.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 31

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    35. NM_001400797.1 → NP_001387726.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 33

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    36. NM_001400799.1 → NP_001387728.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 34

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    37. NM_001400800.1 → NP_001387729.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 35

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    38. NM_001400801.1 → NP_001387730.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 19

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
      Related
      ENSP00000442431.1, ENST00000544967.5
    39. NM_001400802.1 → NP_001387731.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 19

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    40. NM_001400803.1 → NP_001387732.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 36

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    41. NM_001400804.1 → NP_001387733.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 36

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    42. NM_001400805.1 → NP_001387734.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 38

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    43. NM_001400806.1 → NP_001387735.1  ubiquitin carboxyl-terminal hydrolase 28 isoform q

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    44. NM_001400807.1 → NP_001387736.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 35

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    45. NM_001400809.1 → NP_001387738.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 40

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    46. NM_001400810.1 → NP_001387739.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 41

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    47. NM_001400811.1 → NP_001387740.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 19

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    48. NM_001400812.1 → NP_001387741.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 42

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    49. NM_001400813.1 → NP_001387742.1  ubiquitin carboxyl-terminal hydrolase 28 isoform 36

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544
    50. NM_020886.4 → NP_065937.1  ubiquitin carboxyl-terminal hydrolase 28 isoform a

      See identical proteins and their annotated locations for NP_065937.1

      Status: REVIEWED

      Source sequence(s)
      AF266283, AP001874, AP003170, BC035986, BF434481, DB061316
      Consensus CDS
      CCDS31680.1
      UniProtKB/Swiss-Prot
      B0YJC0, B0YJC1, Q6NZX9, Q96RU2, Q9P213
      Related
      ENSP00000003302.4, ENST00000003302.8
      Conserved Domains (4) summary
      cd02665
      Location:163 → 648
      Peptidase_C19I; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cd14355
      Location:23 → 64
      UBA_UBP28; UBA domain found in ubiquitin carboxyl-terminal hydrolase 28 (UBP28) and similar proteins
      cl02553
      Location:163 → 267
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam00443
      Location:161 → 398
      UCH; Ubiquitin carboxyl-terminal hydrolase

    RNA

    1. NR_174609.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AP001874, AP003170, KF459544

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      113797875..113875572 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      113808211..113885899 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)