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    LOC105379193 uncharacterized LOC105379193 [ Homo sapiens (human) ]

    Gene ID: 105379193, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105379193
    Gene description
    uncharacterized LOC105379193
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in kidney (RPKM 13.9), colon (RPKM 12.6) and 25 other tissues See more
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    Genomic context

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    See LOC105379193 in Genome Data Viewer
    Location:
    5q31.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (138571078..138585089)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (139097323..139111336)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene heat shock protein family A (Hsp70) member 9 Neighboring gene small nucleolar RNA, C/D box 63B Neighboring gene small nucleolar RNA, C/D box 63 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:137910671-137911318 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:137911319-137911967 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23210 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23211 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23212 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:137945276-137945908 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:137945909-137946541 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:137946542-137947174 Neighboring gene ribosomal protein L10a pseudogene 10 Neighboring gene small nucleolar RNA U13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      138571078..138585089
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001742899.1 RNA Sequence

    2. XR_001742900.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      139097323..139111336
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007075963.1 RNA Sequence

    2. XR_007075962.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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