LOC4345606 betaine aldehyde dehydrogenase 2-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4345606
Gene description: betaine aldehyde dehydrogenase 2-like
Locus tag: OSNPB_080424500
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: fgr; BADH2; OsBADH2; OsJ_27367
Expression: Ubiquitous expression in flowers (RPKM 105.4), flower buds (RPKM 96.4) and 6 other tissues See more
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Genomic context

Location:: chromosome: 8

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	8	NC_029263.1 (20379779..20386042)

Chromosome 8 - NC_029263.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:: NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

analysis of BADH1 and BADH2 in rice (Oryza sativa) reveals that BADH2 was domesticated during rice evolution, while BADH1 was not selected by human beings
Title: Resequencing Reveals Different Domestication Rate for BADH1 and BADH2 in Rice (Oryza sativa).
Point mutation of BADH accounted for the accumulation of gamma-aminobutyraldehyde prior to conversion to 2-acetyl-1-pyrroline, generating fragrance in Myanmar rice.
Title: Biochemical and enzymatic study of rice BADH wild-type and mutants: an insight into fragrance in rice.
The Os08g0424500 gene product has major activity towards gamma-aminoaldehyde and minor activity towards betaine aldehyde and other aminoaldehydes. [BAD2]
Title: Inactivation of an aminoaldehyde dehydrogenase is responsible for fragrance in rice.
This paper is the first that identified a non-functional Os08g0424500 as being responsible for the generation of 2-Acetyl-1-pyrroline in Jasmine and Basmati style rice.
Title: The gene for fragrance in rice.
inhibits 2-acetyl-1-pyrroline biosynthesis by exhausting AB-ald, a presumed 2AP precursor
Title: Badh2, encoding betaine aldehyde dehydrogenase, inhibits the biosynthesis of 2-acetyl-1-pyrroline, a major component in rice fragrance.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: betaine aldehyde dehydrogenase 2

Names: OSJNBa0056L09.30; Os08g0424500; P0456B03.101; putative betaine-aldehyde dehydrogenase

XP_015650889.1

EC 1.2.1.8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001403573.1 → NP_001390502.1 betaine aldehyde dehydrogenase 2

Status: VALIDATED

Source sequence(s)

CB649658, CB649659, CB655655, CB655656, CF329625, CI766545

UniProtKB/Swiss-Prot

A0A0N7KPV7, B3VMC0, Q06DE4, Q84LK3

UniProtKB/TrEMBL

A0A8K1HC45

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029263.1 Reference IRGSP-1.0 Primary Assembly

Range

20379779..20386042

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015795403.2 → XP_015650889.1 betaine aldehyde dehydrogenase 2

UniProtKB/Swiss-Prot

Q84LK3

Conserved Domains (1) summary

PLN02467
Location:1 → 503

PLN02467; betaine aldehyde dehydrogenase