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    ptafr platelet-activating factor receptor [ Rhincodon typus (whale shark) ]

    Gene ID: 109918531, updated on 14-Mar-2024

    Summary

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    Gene symbol
    ptafr
    Gene description
    platelet-activating factor receptor
    See related
    EnsemblRapid:ENSRTYG00015011587
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rhincodon typus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Rhincodontidae; Rhincodon
    Orthologs
    human zebrafish all
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    Genomic context

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    See ptafr in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current sRhiTyp1.1 (GCF_021869965.1) 27 NC_063358.1 (11075434..11166373)
    100 previous assembly ASM164234v2 (GCF_001642345.1) Unplaced Scaffold NW_018038154.1 (123186..134810)

    Chromosome 27 - NC_063358.1Genomic Context describing neighboring genes Neighboring gene ATP synthase inhibitory factor subunit 1 Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 8 Neighboring gene uncharacterized LOC125486305 Neighboring gene 60S ribosomal protein L17-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G protein-coupled purinergic nucleotide receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables platelet activating factor receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    platelet-activating factor receptor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rhincodon typus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sRhiTyp1.1

    Genomic

    1. NC_063358.1 Reference sRhiTyp1.1

      Range
      11075434..11166373
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_048613296.1 → XP_048469253.1  platelet-activating factor receptor

      Related
      ENSRTYP00015017980.1, ENSRTYT00015019930.1

    2. XM_048613297.1 → XP_048469254.1  platelet-activating factor receptor

      Related
      ENSRTYP00015017988.1, ENSRTYT00015019939.1

    3. XM_020518462.2 → XP_020374051.1  platelet-activating factor receptor

      Related
      ENSRTYP00015017975.1, ENSRTYT00015019926.1
      Conserved Domains (2) summary
      cd14964
      Location:35 → 59
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:33 → 319
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

    4. XM_048613294.1 → XP_048469251.1  platelet-activating factor receptor

      Related
      ENSRTYP00015017966.1, ENSRTYT00015019917.1

    5. XM_048613293.1 → XP_048469250.1  platelet-activating factor receptor

    6. XM_048613295.1 → XP_048469252.1  platelet-activating factor receptor

    Nucleotide Protein
    Heading Accession and Version

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