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    ngdn neuroguidin, EIF4E binding protein [ Lates calcarifer (barramundi perch) ]

    Gene ID: 108898239, updated on 10-Apr-2024

    Summary

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    Gene symbol
    ngdn
    Gene description
    neuroguidin, EIF4E binding protein
    See related
    EnsemblRapid:ENSLCAG00010003022
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lates calcarifer
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
    Orthologs
    human zebrafish all
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    Genomic context

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    See ngdn in Genome Data Viewer
    Location:
    chromosome: LG24
    Exon count:
    11
    Annotation release Status Assembly LG Location
    RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG24 NC_066856.1 (119542..123054, complement)
    100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365947.1 (119542..122947, complement)

    Linkage Group LG24 - NC_066856.1Genomic Context describing neighboring genes Neighboring gene zinc finger homeobox 2 Neighboring gene poly(A) binding protein, nuclear 1 Neighboring gene CCAAT/enhancer binding protein (C/EBP) 1 Neighboring gene solute carrier family 22 member 17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer). Ravi P, et al. Reprod Biol Endocrinol, 2014 Jan 9. PMID 24405829, Free PMC Article
    2. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neuroguidin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TLL_Latcal_v3 Primary Assembly

    Genomic

    1. NC_066856.1 Reference TLL_Latcal_v3 Primary Assembly

      Range
      119542..123054 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018698168.2 → XP_018553684.1  neuroguidin

      UniProtKB/TrEMBL
      A0A4W6BXU5, A0A4W6BYB9
      Related
      ENSLCAP00010006077.2, ENSLCAT00010006229.2
    Nucleotide Protein
    Heading Accession and Version

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