U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    pabpn1 poly(A) binding protein, nuclear 1 [ Lates calcarifer (barramundi perch) ]

    Gene ID: 108898238, updated on 1-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    pabpn1
    Gene description
    poly(A) binding protein, nuclear 1
    See related
    EnsemblRapid:ENSLCAG00010003012
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lates calcarifer
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See pabpn1 in Genome Data Viewer
    Location:
    chromosome: LG24
    Exon count:
    9
    Annotation release Status Assembly LG Location
    RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG24 NC_066856.1 (109900..118805)
    100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365947.1 (109897..118385)

    Linkage Group LG24 - NC_066856.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108898230 Neighboring gene thiamine triphosphatase Neighboring gene zinc finger homeobox 2 Neighboring gene neuroguidin, EIF4E binding protein Neighboring gene CCAAT/enhancer binding protein (C/EBP) 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    polyadenylate-binding protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TLL_Latcal_v3 Primary Assembly

    Genomic

    1. NC_066856.1 Reference TLL_Latcal_v3 Primary Assembly

      Range
      109900..118805
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018698164.2 → XP_018553680.1  polyadenylate-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A4W6BXS8, A0A4W6C587
      Related
      ENSLCAP00010006061.1, ENSLCAT00010006213.2
      Conserved Domains (2) summary
      cd12550
      Location:99 → 174
      RRM_II_PABPN1; RNA recognition motif in type II polyadenylate-binding protein 2 (PABP-2) and similar proteins
      cl25887
      Location:89 → 256
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    2. XM_018698165.2 → XP_018553681.1  polyadenylate-binding protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A4W6C3B9, A0A4W6C593
      Related
      ENSLCAP00010006073.1, ENSLCAT00010006225.2
      Conserved Domains (1) summary
      cd12550
      Location:99 → 174
      RRM_II_PABPN1; RNA recognition motif in type II polyadenylate-binding protein 2 (PABP-2) and similar proteins

    3. XM_018698167.2 → XP_018553683.1  polyadenylate-binding protein 2 isoform X3

      UniProtKB/TrEMBL
      A0AAJ7QDZ7
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.