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    lrrc42 leucine rich repeat containing 42 [ Acanthochromis polyacanthus (spiny chromis) ]

    Gene ID: 110954536, updated on 15-Mar-2024

    Summary

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    Gene symbol
    lrrc42
    Gene description
    leucine rich repeat containing 42
    See related
    Ensembl:ENSAPOG00000010233
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acanthochromis polyacanthus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
    Orthologs
    human zebrafish all
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    Genomic context

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    See lrrc42 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 9 NC_067121.1 (16499982..16502341, complement)

    Chromosome 9 - NC_067121.1Genomic Context describing neighboring genes Neighboring gene transcription elongation factor A (SII) N-terminal and central domain containing 2 Neighboring gene transmembrane protein 59 Neighboring gene Yip1 domain family, member 1 Neighboring gene uncharacterized LOC110954527

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067121.1 Chromosome 9 Reference KAUST_Apoly_ChrSc

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    leucine-rich repeat-containing protein 42

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KAUST_Apoly_ChrSc

    Genomic

    1. NC_067121.1 Reference KAUST_Apoly_ChrSc

      Range
      16499982..16502341 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022199121.2 → XP_022054813.1  leucine-rich repeat-containing protein 42 isoform X2

      Conserved Domains (2) summary
      sd00031
      Location:152 → 174
      LRR_1; leucine-rich repeat [structural motif]
      cl26161
      Location:145 → 249
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    2. XM_022199120.2 → XP_022054812.1  leucine-rich repeat-containing protein 42 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1EWE1
      Related
      ENSAPOP00000008147.1
      Conserved Domains (2) summary
      sd00031
      Location:152 → 174
      LRR_1; leucine-rich repeat [structural motif]
      cl26161
      Location:145 → 250
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    Nucleotide Protein
    Heading Accession and Version

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