U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    ndc1 NDC1 transmembrane nucleoporin [ Acanthochromis polyacanthus (spiny chromis) ]

    Gene ID: 110954534, updated on 15-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    ndc1
    Gene description
    NDC1 transmembrane nucleoporin
    See related
    Ensembl:ENSAPOG00000010350
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acanthochromis polyacanthus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ndc1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 9 NC_067121.1 (16510808..16523002)

    Chromosome 9 - NC_067121.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110954527 Neighboring gene Yip1 domain family, member 1 Neighboring gene DDB1 and CUL4 associated factor 8 Neighboring gene guanine nucleotide exchange factor VAV3-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_067121.1 Chromosome 9 Reference KAUST_Apoly_ChrSc

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-macromolecule adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear pore organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore transmembrane ring IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    LOW QUALITY PROTEIN: nucleoporin NDC1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KAUST_Apoly_ChrSc

    Genomic

    1. NC_067121.1 Reference KAUST_Apoly_ChrSc

      Range
      16510808..16523002
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051953993.1 → XP_051809953.1  LOW QUALITY PROTEIN: nucleoporin NDC1

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.