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    LOC117570514 basic proline-rich protein [ Drosophila albomicans ]

    Gene ID: 117570514, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC117570514
    Gene description
    basic proline-rich protein
    See related
    EnsemblRapid:LOC117570514
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila albomicans
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC117570514 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current ASM965048v2 (GCF_009650485.2) X NC_047627.2 (14205363..14211421, complement)
    100 previous assembly drosAlbom15112-1751.03v1 (GCF_009650485.1) X NC_047627.1 (19161297..19167119)

    Chromosome X - NC_047627.2Genomic Context describing neighboring genes Neighboring gene TATA box binding protein-related factor 2 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class T Neighboring gene CTD nuclear envelope phosphatase 1-like protein dullard Neighboring gene SRA stem-loop interacting RNA binding protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    basic proline-rich protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila albomicans Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM965048v2

    Genomic

    1. NC_047627.2 Reference ASM965048v2

      Range
      14205363..14211421 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034252217.2 → XP_034108108.1  basic proline-rich protein isoform X1

      UniProtKB/TrEMBL
      A0A6P8X827
      Related
      XP_034108108.1, XM_034252217.2
      Conserved Domains (1) summary
      pfam05030
      Location:128 → 187
      SSXT; SSXT protein (N-terminal region)

    2. XM_034252224.2 → XP_034108115.1  basic proline-rich protein isoform X2

      UniProtKB/TrEMBL
      A0A6P8X9Y4
      Related
      XP_034108115.1, XM_034252224.2
      Conserved Domains (1) summary
      pfam05030
      Location:128 → 187
      SSXT; SSXT protein (N-terminal region)
    Nucleotide Protein Strain
    Heading Accession and Version

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