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    LINC02325 long intergenic non-protein coding RNA 2325 [ Homo sapiens (human) ]

    Gene ID: 101929241, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC02325provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2325provided by HGNC
    Primary source
    HGNC:HGNC:53245
    See related
    Ensembl:ENSG00000246084 AllianceGenome:HGNC:53245
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02325 in Genome Data Viewer
    Location:
    14q32.2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (97458816..97581383)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (91690672..91813276)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (97925153..98047720)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370647 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:97573059-97574258 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_38968 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:97646084-97647283 Neighboring gene long intergenic non-protein coding RNA 2304 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:97732279-97733478 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8994 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8995 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8996 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:97832410-97832945 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:97832946-97833480 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr14:97845143-97845772 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8998 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8999 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr14:97869232-97870431 Neighboring gene NANOG hESC enhancer GRCh37_chr14:97878244-97878765 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:97906411-97906911 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9000 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_38981 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_38982 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:98001127-98001628 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:98008053-98009252 Neighboring gene uncharacterized LOC124903378 Neighboring gene long intergenic non-protein coding RNA 2291 Neighboring gene uncharacterized LOC124903377 Neighboring gene uncharacterized LOC105370650

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • CTD-2506J14.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110165.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      BC038465, DB124165
      Related
      ENST00000499910.4

    2. NR_110166.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two exons and includes four alternate exons, compared to variant 1.
      Source sequence(s)
      AL355098, DB124165

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      97458816..97581383
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      91690672..91813276
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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