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    LOC127897741 H3K4me1 hESC enhancer GRCh37_chrX:68437057-68437556 [ Homo sapiens (human) ]

    Gene ID: 127897741, updated on 12-Sep-2024

    Summary

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    Gene symbol
    LOC127897741
    Gene description
    H3K4me1 hESC enhancer GRCh37_chrX:68437057-68437556
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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    Genomic context

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    See LOC127897741 in Genome Data Viewer
    Location:
    chromosome: X
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (69217214..69217713)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (67650590..67651089)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (68437057..68437556)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68409565-68410066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68410067-68410566 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 35 Neighboring gene long intergenic non-protein coding RNA 269 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68442199-68442970 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68475969-68476469 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68476955-68477456 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:68482961-68483512 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:68483513-68484063 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:68484064-68484614 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:68500351-68500533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68505841-68506822 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chrX:68509810-68510701 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68513310-68513810 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68513811-68514311 Neighboring gene NANOG hESC enhancer GRCh37_chrX:68525339-68525849 Neighboring gene NANOG hESC enhancer GRCh37_chrX:68597698-68598220 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20887 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68668613-68669113 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:68725122-68725295 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68726227-68726726 Neighboring gene CYCS pseudogene 43 Neighboring gene NALCN channel auxiliary factor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_147096.1 

      Range
      101..600
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      69217214..69217713
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      67650590..67651089
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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