Phyhipl phytanoyl-CoA hydroxylase interacting protein-like [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Phyhiplprovided by MGI
Official Full Name: phytanoyl-CoA hydroxylase interacting protein-likeprovided by MGI
Primary source: MGI:MGI:1918161
See related: Ensembl:ENSMUSG00000037747 AllianceGenome:MGI:1918161
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: PHY2; 4921522K17Rik
Summary: Located in mitochondrion. Is expressed in several structures, including nervous system; neural retina; and olfactory epithelium. Orthologous to human PHYHIPL (phytanoyl-CoA 2-hydroxylase interacting protein like). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in testis adult (RPKM 75.5), cerebellum adult (RPKM 31.7) and 6 other tissues See more
Orthologs: human all
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Genomic context

Location:: 10 B5.3; 10 36.69 cM

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	10	NC_000076.7 (70393516..70435121, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	10	NC_000076.6 (70557686..70599291, complement)

Chromosome 10 - NC_000076.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (3) 1 citation
Targeted (1)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

RH127414 (e-PCR)
- UniSTS:210724

BB360116 (e-PCR)
- UniSTS:208553

AI267048 (e-PCR)
- UniSTS:159990

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	ISO Inferred from Sequence Orthology more info
located_in mitochondrion	HDA more info	PubMed

General protein information

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Preferred Names: phytanoyl-CoA hydroxylase-interacting protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001162846.1 → NP_001156318.1 phytanoyl-CoA hydroxylase-interacting protein-like isoform 2

Status: VALIDATED

Description

Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.

Source sequence(s)

AC122896, AK029522, AK032166

Consensus CDS

CCDS48593.1

UniProtKB/TrEMBL

F7D3N3

Related

ENSMUSP00000125179.2, ENSMUST00000162251.8

Conserved Domains (1) summary

cd00063
Location:7 → 112

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
NM_178621.4 → NP_848736.2 phytanoyl-CoA hydroxylase-interacting protein-like isoform 1

See identical proteins and their annotated locations for NP_848736.2

Status: VALIDATED

Description

Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).

Source sequence(s)

AC122896, AK029522, AK032166

Consensus CDS

CCDS23914.1

UniProtKB/Swiss-Prot

A4FVA0, Q8BGT8, Q8BZJ1, Q8C0X3, Q8CFU1, Q8R0C1

Related

ENSMUSP00000045807.4, ENSMUST00000046513.10

Conserved Domains (1) summary

cd00063
Location:52 → 157

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000076.7 Reference GRCm39 C57BL/6J

Range

70393516..70435121 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006514112.4 → XP_006514175.1 phytanoyl-CoA hydroxylase-interacting protein-like isoform X1

Conserved Domains (1) summary

cd00063
Location:35 → 140

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...