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    NEMP2-DT NEMP2 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 105376748, updated on 10-Oct-2023

    Summary

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    Official Symbol
    NEMP2-DTprovided by HGNC
    Official Full Name
    NEMP2 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:55713
    See related
    Ensembl:ENSG00000233654 AllianceGenome:HGNC:55713
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    2q32.2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (190534838..190639528)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (191024161..191128853)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene serine/arginine repetitive matrix protein 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12176 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12177 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16859 Neighboring gene inositol polyphosphate-1-phosphatase Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16860 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12178 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:191293549-191293748 Neighboring gene major facilitator superfamily domain containing 6 Neighboring gene nuclear envelope integral membrane protein 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12179 Neighboring gene uncharacterized LOC124906136 Neighboring gene RN7SK pseudogene 179 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16861 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:191472316-191473515 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:191501909-191502643 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12180 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12181 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12182 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12183 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12184 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16863 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16864 Neighboring gene NGFI-A binding protein 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16865 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16866 Neighboring gene uncharacterized LOC124907946 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:191624535-191625734

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    Genotypes

    General gene information

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    Clone Names

    • AC093388.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183902.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006460, AC093388, AC108047

    2. NR_183903.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006460, AC093388, AC108047

    3. NR_183904.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006460, AC093388, AC108047

    4. NR_183905.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093388, AC108047

    5. NR_183906.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093388, AC108047

    6. NR_183907.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093388, AC108047
      Related
      ENST00000457407.2

    7. NR_183908.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093388, AC108047

    8. NR_183909.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093388, AC108047

    9. NR_183910.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093388, AC108047

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      190534838..190639528
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      191024161..191128853
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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