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    MICPUN_91017 SNF2 super family [ Micromonas commoda ]

    Gene ID: 8244101, updated on 16-Nov-2023

    Summary

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    Gene symbol
    MICPUN_91017
    Gene description
    SNF2 super family
    Locus tag
    MICPUN_91017
    Gene type
    protein coding
    RNA name
    SNF2 super family
    RefSeq status
    PROVISIONAL
    Organism
    Micromonas commoda (strain: RCC299)
    Lineage
    Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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    Genomic context

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    See MICPUN_91017 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Sequence:
    Chromosome: 6; NC_013043.1 (384694..391395, complement)

    Chromosome 6 - NC_013043.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_013043.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Worden AZ, et al. Science, 2009 Apr 10. PMID 19359590
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    SNF2 super family
    XP_002503171.1
    • SNF2 superfamily chromatin remodeling protein; predicted member of the imitation-switch (ISWI) class of ATP-dependent chromatin remodeling complexes protein involved in regulation of transcription

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013043.1 Reference assembly

      Range
      384694..391395 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002503125.1 → XP_002503171.1  SNF2 super family [Micromonas commoda]

      See identical proteins and their annotated locations for XP_002503171.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      C1E808
      Conserved Domains (5) summary
      PLN03142
      Location:19 → 1011
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd00046
      Location:186 → 326
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00271
      Location:485 → 582
      Helicase_C; Helicase conserved C-terminal domain
      pfam09110
      Location:739 → 830
      HAND; HAND
      pfam09111
      Location:893 → 1002
      SLIDE; SLIDE
    Nucleotide Protein
    Heading Accession and Version

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