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    Gm6710 predicted gene 6710 [ Mus musculus (house mouse) ]

    Gene ID: 626832, updated on 28-Oct-2024

    Summary

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    Official Symbol
    Gm6710provided by MGI
    Official Full Name
    predicted gene 6710provided by MGI
    Primary source
    MGI:MGI:3779623
    See related
    Ensembl:ENSMUSG00000078887 AllianceGenome:MGI:3779623
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    WF-4; 1600017I02Rik; 2310011F05Rik; 2900089K14Rik; 3100002L24Rik
    Summary
    Is expressed in central nervous system; retina inner nuclear layer; and retina outer nuclear layer. Orthologous to human ZNF17 (zinc finger protein 17) and ZNF442 (zinc finger protein 442). [provided by Alliance of Genome Resources, Oct 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Expression
    Broad expression in bladder adult (RPKM 6.4), cerebellum adult (RPKM 6.0) and 24 other tissues See more
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    Genomic context

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    See Gm6710 in Genome Data Viewer
    Location:
    2 H4; 2 98.72 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (175661013..175674975)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (175869215..175885510)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene ribosomal protein S8, pseudogene 2 Neighboring gene zinc finger protein 937 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr2:175868122-175868422 Neighboring gene predicted gene, 42247 Neighboring gene zinc finger protein 966

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Genomic analysis of mouse retinal development. Blackshaw S, et al. PLoS Biol, 2004 Sep. PMID 15226823, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    KRAB box and zinc finger, C2H2 type domain containing protein
    Names
    KRAB box and zinc finger, C2H2 type domain containing

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001164689.1 → NP_001158161.1  KRAB box and zinc finger, C2H2 type domain containing protein

      See identical proteins and their annotated locations for NP_001158161.1

      Status: VALIDATED

      Source sequence(s)
      AL845476
      Consensus CDS
      CCDS50823.1
      UniProtKB/TrEMBL
      A2ART0, F7CJX1
      Related
      ENSMUSP00000104640.4, ENSMUST00000109012.4
      Conserved Domains (4) summary
      COG5048
      Location:129 → 515
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:357 → 377
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:3 → 44
      KRAB; KRAB box
      pfam13465
      Location:509 → 534
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      175661013..175674975
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030251928.2 → XP_030107788.2  KRAB box and zinc finger, C2H2 type domain containing protein isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:185 → 347
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:301 → 321
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:3 → 44
      KRAB; KRAB box
      pfam13465
      Location:341 → 366
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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