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    LOC115849624 lysine-specific demethylase 6A-like [ Globicephala melas (long-finned pilot whale) ]

    Gene ID: 115849624, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC115849624
    Gene description
    lysine-specific demethylase 6A-like
    See related
    EnsemblRapid:ENSGMEG00000011791
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Globicephala melas
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Globicephala
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    Genomic context

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    See LOC115849624 in Genome Data Viewer
    Location:
    chromosome: Y
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2023_10 current mGloMel1.1 (GCF_963455315.1) Y NC_083336.1 (78130..241202, complement)
    100 previous assembly ASM654740v1 (GCF_006547405.1) Unplaced Scaffold NW_022135104.1 (79200..242295, complement)

    Chromosome Y - NC_083336.1Genomic Context describing neighboring genes Neighboring gene claudin 34 Neighboring gene shieldin complex subunit 1-like Neighboring gene ATP-dependent RNA helicase DDX3X Neighboring gene probable ubiquitin carboxyl-terminal hydrolase FAF-X

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K27me2/H3K27me3 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heart development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MLL3/4 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific demethylase 6A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_963455315.1-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mGloMel1.1 Primary Assembly

    Genomic

    1. NC_083336.1 Reference mGloMel1.1 Primary Assembly

      Range
      78130..241202 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_060293133.1 → XP_060149116.1  lysine-specific demethylase 6A-like isoform X6

    2. XM_060293130.1 → XP_060149113.1  lysine-specific demethylase 6A-like isoform X3

    3. XM_060293132.1 → XP_060149115.1  lysine-specific demethylase 6A-like isoform X5

    4. XM_060293131.1 → XP_060149114.1  lysine-specific demethylase 6A-like isoform X4

    5. XM_060293129.1 → XP_060149112.1  lysine-specific demethylase 6A-like isoform X2

    6. XM_060293128.1 → XP_060149111.1  lysine-specific demethylase 6A-like isoform X1

    7. XM_060293135.1 → XP_060149118.1  lysine-specific demethylase 6A-like isoform X8

    8. XM_060293134.1 → XP_060149117.1  lysine-specific demethylase 6A-like isoform X7

    Nucleotide Protein
    Heading Accession and Version

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