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    LOC127120889 chalcone synthase 2 [ Pisum sativum (garden pea) ]

    Gene ID: 127120889, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC127120889
    Gene description
    chalcone synthase 2
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Pisum sativum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Fabeae; Pisum
    Also known as
    CHS2; PCHS2; PsCHS2
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    Genomic context

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    See LOC127120889 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current CAAS_Psat_ZW6_1.0 (GCF_024323335.1) 2 NC_066580.1 (490061139..490062672, complement)

    Chromosome 2 - NC_066580.1Genomic Context describing neighboring genes Neighboring gene beta-glucuronosyltransferase GlcAT14A-like Neighboring gene uncharacterized LOC127120885 Neighboring gene chalcone synthase 1 Neighboring gene chalcone synthase 6-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_066580.1 Chromosome 2 Reference CAAS_Psat_ZW6_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular cloning of chalcone synthase cDNAs from Pisum sativum. Ichinose Y, et al. Plant Mol Biol, 1992 Mar. PMID 1581561
    2. Transcriptome sequencing for high throughput SNP development and genetic mapping in Pea. Duarte J, et al. BMC Genomics, 2014 Feb 12. PMID 24521263, Free PMC Article
    3. De novo assembly and characterisation of the field pea transcriptome using RNA-Seq. Sudheesh S, et al. BMC Genomics, 2015 Aug 16. PMID 26275991, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in polyketide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chalcone synthase 2
    Names
    Naregenin-chalcone synthase 2
    naregenin-chalcone synthase
    XP_050907436.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427551.1 → NP_001414480.1  chalcone synthase 2

      Status: VALIDATED

      Source sequence(s)
      GCMF01002417, GEZC01089288, X63334
      UniProtKB/TrEMBL
      A0A9D4YJS9

    RefSeqs of Annotated Genomes: Pisum sativum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Psat_ZW6_1.0

    Genomic

    1. NC_066580.1 Reference CAAS_Psat_ZW6_1.0

      Range
      490061139..490062672 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051051479.1 → XP_050907436.1  chalcone synthase 2

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q01287.1 GenPept UniProtKB/Swiss-Prot:Q01287

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