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    LOC129476766 TATA-box binding protein associated factor 11 like protein 2-like [ Symphalangus syndactylus (siamang) ]

    Gene ID: 129476766, updated on 18-Jul-2024

    Summary

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    Gene symbol
    LOC129476766
    Gene description
    TATA-box binding protein associated factor 11 like protein 2-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Symphalangus syndactylus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Symphalangus
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    Genomic context

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    See LOC129476766 in Genome Data Viewer
    Location:
    chromosome: Y
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_07 current NHGRI_mSymSyn1-v2.1_pri (GCF_028878055.3) Y NC_072448.2 (28041886..28100756)
    RS_2023_03 previous assembly NHGRI_mSymSyn1-v1.1-hic.freeze_pri (GCF_028878055.1) Y NC_072448.1 (28035813..28061546)

    Chromosome Y - NC_072448.2Genomic Context describing neighboring genes Neighboring gene transcription initiation factor TFIID subunit 13-like Neighboring gene general transcription factor II-I-like Neighboring gene transcription initiation factor TFIID subunit 13-like Neighboring gene uncharacterized LOC129476702

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA polymerase II preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TATA-box binding protein associated factor 11 like protein 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028878055.3-RS_2024_07

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mSymSyn1-v2.1_pri Primary Assembly

    Genomic

    1. NC_072448.2 Reference NHGRI_mSymSyn1-v2.1_pri Primary Assembly

      Range
      28041886..28100756
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063635513.1 → XP_063491583.1  TATA-box binding protein associated factor 11 like protein 2-like

    RNA

    1. XR_010119871.1 RNA Sequence

    2. XR_010119873.1 RNA Sequence

    3. XR_010119872.1 RNA Sequence

    4. XR_008655069.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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