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    LOC100854880 DEAD-box ATP-dependent RNA helicase 38 [ Vitis vinifera (wine grape) ]

    Gene ID: 100854880, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100854880
    Gene description
    DEAD-box ATP-dependent RNA helicase 38
    Locus tag
    VIT_00006096001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100854880 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 8 NC_081812.1 (19557577..19563229)
    102 previous assembly 12X (GCF_000003745.3) Unplaced Scaffold NW_003725432.1 (188..2590)

    Chromosome 8 - NC_081812.1Genomic Context describing neighboring genes Neighboring gene DEAD-box ATP-dependent RNA helicase 38 Neighboring gene protein PELOTA 1-like Neighboring gene protein PELOTA 1-like Neighboring gene uncharacterized LOC100247014

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DEAD-box ATP-dependent RNA helicase 38

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081812.1 Reference ASM3070453v1 Primary Assembly

      Range
      19557577..19563229
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059739203.1 → XP_059595186.1  DEAD-box ATP-dependent RNA helicase 38 isoform X1

    2. XM_059739204.1 → XP_059595187.1  DEAD-box ATP-dependent RNA helicase 38 isoform X2

    3. XM_059739206.1 → XP_059595189.1  DEAD-box ATP-dependent RNA helicase 38 isoform X4

    4. XM_059739205.1 → XP_059595188.1  DEAD-box ATP-dependent RNA helicase 38 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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