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    LINC01435 long intergenic non-protein coding RNA 1435 [ Homo sapiens (human) ]

    Gene ID: 103695365, updated on 10-Oct-2023

    Summary

    Official Symbol
    LINC01435provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1435provided by HGNC
    Primary source
    HGNC:HGNC:50753
    See related
    Ensembl:ENSG00000229981 AllianceGenome:HGNC:50753
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TCONS_00018040
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01435 in Genome Data Viewer
    Location:
    10q25.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (107871576..108069293, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (108758459..108956199, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (109631334..109829051, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:109223615-109224181 Neighboring gene RNA, 5S ribosomal pseudogene 326 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2802 Neighboring gene uncharacterized LOC101927573 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:109799357-109800556 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3995 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:109856695-109857664 Neighboring gene uncharacterized LOC105378476 Neighboring gene prostaglandin E synthase 3 pseudogene 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125760.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA406208, AL162273, AL355275, BX116650
      Related
      ENST00000425050.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      107871576..108069293 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      108758459..108956199 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)