U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    Cd200r1 CD200 receptor 1 [ Mus musculus (house mouse) ]

    Gene ID: 57781, updated on 2-Nov-2024

    Summary

    Official Symbol
    Cd200r1provided by MGI
    Official Full Name
    CD200 receptor 1provided by MGI
    Primary source
    MGI:MGI:1889024
    See related
    Ensembl:ENSMUSG00000022667 AllianceGenome:MGI:1889024
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    OX2R; Mox2r; CD200R
    Summary
    Enables signaling receptor activity. Predicted to be involved in several processes, including negative regulation of interleukin-6 production; negative regulation of mononuclear cell migration; and negative regulation of neuroinflammatory response. Located in external side of plasma membrane. Is expressed in central nervous system; liver lobe; retina; and thymus primordium. Orthologous to several human genes including CD200R1 (CD200 receptor 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in liver E18 (RPKM 1.8), liver E14 (RPKM 1.3) and 22 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Cd200r1 in Genome Data Viewer
    Location:
    16 B4; 16 29.08 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (44586141..44615341)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (44765736..44794977)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30445 Neighboring gene STARR-positive B cell enhancer ABC_E10905 Neighboring gene nucleolus and neural progenitor protein Neighboring gene GTP-binding protein 8 (putative) Neighboring gene STARR-positive B cell enhancer mm9_chr16:44746411-44746712 Neighboring gene STARR-positive B cell enhancer ABC_E5543 Neighboring gene lactate dehydrogenase A pseudogene Neighboring gene synaptotagmin binding, cytoplasmic RNA interacting protein pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (6) 
    • Targeted (5)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein binding involved in heterotypic cell-cell adhesion ISO
    Inferred from Sequence Orthology
    more info
     
    enables signaling receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables signaling receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell surface ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in external side of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in external side of plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    part_of receptor complex ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    cell surface glycoprotein CD200 receptor 1
    Names
    CD200 cell surface glycoprotein receptor
    Orexin receptor 2
    antigen identified by monoclonal antibody MRC OX-2 receptor
    cell surface glycoprotein OX2 receptor 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_021325.4NP_067300.1  cell surface glycoprotein CD200 receptor 1 precursor

      See identical proteins and their annotated locations for NP_067300.1

      Status: VALIDATED

      Source sequence(s)
      AC122217
      Consensus CDS
      CCDS28189.1
      UniProtKB/Swiss-Prot
      Q9ES57
      Related
      ENSMUSP00000053822.9, ENSMUST00000057488.15
      Conserved Domains (3) summary
      smart00410
      Location:106146
      IG_like; Immunoglobulin like
      pfam07686
      Location:42147
      V-set; Immunoglobulin V-set domain
      cl11960
      Location:162222
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      44586141..44615341
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)