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    LOC542540 low phytic acid 1 [ Zea mays ]

    Gene ID: 542540, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC542540
    Gene description
    low phytic acid 1
    Locus tag
    ZEAMMB73_Zm00001d028180
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    INO1; lpa1; GRMZM2G155242
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (25396606..25400832)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (25632868..25636485)

    Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene SUPPRESSOR OF GAMMA RESPONSE 1-like Neighboring gene uncharacterized LOC103632610 Neighboring gene NADH-ubiquinone oxidoreductase B16.6 subunit Neighboring gene uncharacterized LOC100276675

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The low phytic acid1-241 (lpa1-241) maize mutation alters the accumulation of anthocyanin pigment in the kernel. Badone FC, et al. Planta, 2010 Apr. PMID 20191364
    2. Expression and nucleotide sequence of an INS (3) P1 synthase gene associated with low-phytate kernels in maize (Zea mays L.). Shukla S, et al. J Agric Food Chem, 2004 Jul 14. PMID 15237968
    3. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
    4. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    5. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These data strongly suggest a possible interaction between the lpa mutation and anthocyanin accumulation and compartmentalisation in the kernel.
      Title: The low phytic acid1-241 (lpa1-241) maize mutation alters the accumulation of anthocyanin pigment in the kernel.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables inositol-3-phosphate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in inositol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phospholipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    inositol-3-phosphate synthase
    Names
    IPS
    MI-1-P synthase
    MIP synthase
    biosynthetic enzyme
    low phytic acid1
    myo-inositol 1-phosphate synthase
    myo-inositol phosphate synthase
    NP_001105552.1
    XP_035817013.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001112082.1 → NP_001105552.1  inositol-3-phosphate synthase

      See identical proteins and their annotated locations for NP_001105552.1

      Status: PROVISIONAL

      Source sequence(s)
      AF323175
      UniProtKB/TrEMBL
      A0A1D6JSL7, B6T9P4
      Conserved Domains (1) summary
      PLN02438
      Location:1 → 510
      PLN02438; inositol-3-phosphate synthase

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      25396606..25400832
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035961120.1 → XP_035817013.1  inositol-3-phosphate synthase isoform X1

      UniProtKB/TrEMBL
      B6T9P4
      Conserved Domains (1) summary
      PLN02438
      Location:1 → 540
      PLN02438; inositol-3-phosphate synthase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FPK7.2 GenPept UniProtKB/Swiss-Prot:Q9FPK7

    Gene LinkOut

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    Molecular Biology Databases