LOC100136882 yellow endosperm 1 [Zea mays] - Gene

Summary

Gene symbol: LOC100136882
Gene description: yellow endosperm 1
Locus tag: ZEAMMB73_Zm00001d036345
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Zea mays
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as: y1; pb1; PSY1; ZmPSY1; GRMZM2G300348
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Genomic context

Location:: chromosome: 6

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
103	current	Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1)	6	NC_050101.1 (91643180..91646525)
102.20200423	previous assembly	B73 RefGen_v4 (GCF_000005005.2)	6	NC_024464.2 (85061410..85064755)

Chromosome 6 - NC_050101.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The phylogenetic tree based on full-length sequences of PSY1-like regions supported the monophyletic theory of the Andropogoneae and the closest relationship between Zea and Tripsacum among the Andropogoneae.
Title: Nucleotide diversity and molecular evolution of the PSY1 gene in Zea mays compared to some other grass species.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables farnesyltranstransferase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables geranylgeranyl-diphosphate geranylgeranyltransferase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in carotenoid biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: phytoene synthase 1, chloroplastic

Names: chloroplast phytoene synthase 1; mutant phytoene synthase; phytoene synthase, chloroplast; phytoene synthase, chloroplastic; plQ60-6M3500; white1; y1ssr; y4; yellow endosperm1

NP_001108124.2

EC 2.5.1.32

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.