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    NUP153-AS1 NUP153 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 105374952, updated on 17-Jun-2024

    Summary

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    Official Symbol
    NUP153-AS1provided by HGNC
    Official Full Name
    NUP153 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:55217
    See related
    Ensembl:ENSG00000272269 AllianceGenome:HGNC:55217
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 5.6) and lymph node (RPKM 0.4) See more
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    Genomic context

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    See NUP153-AS1 in Genome Data Viewer
    Location:
    6p22.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (17706130..17711027)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (17578381..17583278)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (17706361..17711258)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16964 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:17601938-17602438 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:17602439-17602939 Neighboring gene MPRA-validated peak5701 silencer Neighboring gene family with sequence similarity 8 member A1 Neighboring gene MPRA-validated peak5703 silencer Neighboring gene RNA, U6 small nuclear 190, pseudogene Neighboring gene nucleoporin 153 Neighboring gene MPRA-validated peak5705 silencer Neighboring gene MPRA-validated peak5706 silencer Neighboring gene Sharpr-MPRA regulatory region 5716 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:17685707-17686206 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24114 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:17704301-17704470 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16965 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:17706574-17707268 Neighboring gene Sharpr-MPRA regulatory region 4388 Neighboring gene RNA, 5S ribosomal pseudogene 204 Neighboring gene uncharacterized LOC124901554

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134616.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AW978570, BC035502, BC046172
      Related
      ENST00000606771.2

    2. NR_134618.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 3' exon structure, contains additional 3' exons, and is shorter than variant 1.
      Source sequence(s)
      DB024632

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      17706130..17711027
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      17578381..17583278
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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